Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G29001 Striga asiatica HOM05D011405 ORTHO05D013327 1.3e-120 436.4 221 100.0
FAN13G2497 Fragaria x ananassa HOM05D011405 ORTHO05D013327 1.1e-23 114.4 152 53.9
SGA_v2.0_scaffold29G12228 Striga asiatica HOM05D011405 ORTHO05D013327 1.1e-23 114.4 129 52.7
Os05g0585601 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 2.3e-16 90.1 143 44.1
Os05g0491800 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 9.5e-15 84.7 121 48.8
Os03g0788550 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 1.6e-14 84.0 114 46.5
Os05g0467150 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 1.4e-13 80.9 101 49.5
Os02g0685750 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 2.3e-13 80.1 127 47.2
Zm00001eb016060 Zea mays HOM05D011405 ORTHO05D013327 6.4e-11 72.0 99 45.5
Os01g0832450 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 4.1e-10 69.3 99 43.4
Os12g0486700 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 1.2e-09 67.8 73 50.7
SalBow1G1830 Salvia bowleyana HOM05D000265 ORTHO05D000161 2.1e-09 67.0 51 64.7
SalBow1G5392 Salvia bowleyana HOM05D000265 ORTHO05D000161 2.1e-09 67.0 51 64.7
Os11g0171601 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 3.5e-09 66.2 106 43.4
Migut.A00698 Erythranthe guttata HOM05D000265 ORTHO05D000161 1.3e-08 64.3 51 60.8
Nn7g37332 Nelumbo nucifera HOM05D000265 ORTHO05D000161 1.7e-08 63.9 51 58.8
vmacro11417 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.3e-08 63.5 51 60.8
CiPaw.12G087200 Carya illinoinensis HOM05D000265 ORTHO05D000161 3.0e-08 63.2 51 60.8
TAR375G0891 Trochodendron aralioides HOM05D000265 ORTHO05D000161 3.9e-08 62.8 58 53.4
Os12g0169950 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 5.1e-08 62.4 114 40.4
CiPaw.11G127000 Carya illinoinensis HOM05D000265 ORTHO05D000161 6.6e-08 62.0 51 58.8
COL.COLO4_08335 Corchorus olitorius HOM05D000265 ORTHO05D000161 8.6e-08 61.6 51 58.8
Lj8A215T38 Lonicera japonica HOM05D000265 ORTHO05D000161 8.6e-08 61.6 51 58.8
Os01g0221600 Oryza sativa ssp. japonica HOM05D000265 ORTHO05D000161 1.1e-07 61.2 51 56.9
Prupe.5G110600 Prunus persica HOM05D000265 ORTHO05D000161 1.1e-07 61.2 51 58.8
Os07g0161650 Oryza sativa ssp. japonica HOM05D011405 ORTHO05D013327 1.5e-07 60.8 171 35.7
CSS0039766 Camellia sinensis var. sinensis HOM05D000265 ORTHO05D000161 1.9e-07 60.5 51 56.9
Dinv37571 Davidia involucrata HOM05D000265 ORTHO05D000161 1.9e-07 60.5 51 56.9
PSO063G2180 Papaver somniferum HOM05D000265 ORTHO05D000161 1.9e-07 60.5 51 56.9
RcHm_v2.0_Chr7g0196101 Rosa chinensis HOM05D000265 ORTHO05D000161 1.9e-07 60.5 51 56.9
Thecc.03G289100 Theobroma cacao HOM05D000265 ORTHO05D000161 1.9e-07 60.5 51 56.9
PSO170G4828 Papaver somniferum HOM05D000265 ORTHO05D000161 2.5e-07 60.1 51 56.9
FvH4_5g03620 Fragaria vesca HOM05D000265 ORTHO05D000161 3.3e-07 59.7 51 56.9
FAN04G1075 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.3e-07 59.7 51 56.9
FAN13G0048 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.3e-07 59.7 51 56.9
FAN18G1792 Fragaria x ananassa HOM05D000265 ORTHO05D000161 3.3e-07 59.7 51 56.9
Hma1.2p1_0216F.1_g091260 Hydrangea macrophylla HOM05D000265 ORTHO05D000161 3.3e-07 59.7 51 56.9
Actinidia04224 Actinidia chinensis HOM05D000265 ORTHO05D000161 4.3e-07 59.3 51 54.9
CANSAT21G1046 Cannabis sativa HOM05D000265 ORTHO05D000161 4.3e-07 59.3 51 52.9
Cc08_g15510 Coffea canephora HOM05D000265 ORTHO05D000161 4.3e-07 59.3 58 50.0
Dinv38886 Davidia involucrata HOM05D000265 ORTHO05D000161 4.3e-07 59.3 51 54.9
Duzib205G2037 Durio zibethinus HOM05D000265 ORTHO05D000161 7.3e-07 58.5 51 54.9
FAN08G2953 Fragaria x ananassa HOM05D000265 ORTHO05D000161 7.3e-07 58.5 37 70.3
FAN13G1676 Fragaria x ananassa HOM05D000265 ORTHO05D000161 1.2e-06 57.8 37 70.3
QL02p032553 Quercus lobata HOM05D000265 ORTHO05D000161 1.2e-06 57.8 51 54.9
GSVIVG01019447001 Vitis vinifera HOM05D000265 ORTHO05D000161 1.2e-06 57.8 51 52.9
MD14G1116200 Malus domestica HOM05D000265 ORTHO05D000161 1.6e-06 57.4 51 54.9
Oeu063041.1 Olea europaea HOM05D000265 ORTHO05D000161 1.6e-06 57.4 51 54.9
Oeu059582.1 Olea europaea HOM05D000265 ORTHO05D000161 2.1e-06 57.0 51 52.9
Duzib084G1058 Durio zibethinus HOM05D000265 ORTHO05D000161 2.8e-06 56.6 51 51.0
Rhsim02G0237100 Rhododendron simsii HOM05D000265 ORTHO05D000161 3.6e-06 56.2 51 56.9
DCAR_008525 Daucus carota HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 52.9
DCAR_027749 Daucus carota HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 51.0
MD06G1096000 Malus domestica HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 54.9
Manes.01G050800 Manihot esculenta HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 52.9
Potri.001G097300 Populus trichocarpa HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 51.0
Sabra01G0072600 Salix brachista HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 51.0
TAR374G1185 Trochodendron aralioides HOM05D000265 ORTHO05D000161 4.7e-06 55.8 51 51.0
Oeu042374.1 Olea europaea HOM05D000265 ORTHO05D000161 6.2e-06 55.5 51 52.9
TWI15G0850 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 6.2e-06 55.5 51 47.1
Nn1g01752 Nelumbo nucifera HOM05D000265 ORTHO05D000161 8.1e-06 55.1 51 52.9


User provided reference genes

Program Settings