Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 4.3e-224 781.6 582 100.0
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.1e-61 241.1 663 52.3
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.7e-61 240.7 665 52.2
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.6e-59 234.2 287 57.1
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 1.1e-57 228.8 288 58.7
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-51 208.4 288 47.6
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 2.6e-51 207.6 673 52.5
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 9.1e-49 199.1 298 46.6
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 3.5e-48 197.2 292 48.3
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.5e-46 191.8 297 43.8
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.5e-46 191.8 297 43.8
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 4.0e-44 183.7 299 43.8
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 4.0e-44 183.7 297 42.8
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.3e-42 178.7 303 43.2
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 3.1e-41 174.1 299 48.8
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 4.1e-41 173.7 291 51.2
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.6e-40 171.8 299 48.5
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 2.0e-40 171.4 289 42.6
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 2.0e-40 171.4 307 39.7
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 3.5e-40 170.6 296 40.9
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 4.5e-40 170.2 299 41.8
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 1.0e-39 169.1 295 45.8
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.3e-39 168.7 297 40.7
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 8.6e-39 166.0 297 39.4
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 4.3e-38 163.7 296 38.5
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 7.3e-38 162.9 313 38.3
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.6e-37 161.8 295 38.6
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 2.1e-37 161.4 297 47.1
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 2.1e-37 161.4 295 44.4
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 2.1e-37 161.4 297 40.1
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 2.1e-37 161.4 299 42.1
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.1e-37 161.4 291 48.5
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 3.6e-37 160.6 293 48.5
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 8.0e-37 159.5 296 38.2
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 1.0e-36 159.1 286 42.0
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.0e-36 159.1 295 41.4
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.8e-36 158.3 292 44.9
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.3e-36 157.9 300 41.3
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 3.0e-36 157.5 295 45.1
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 5.2e-36 156.8 296 42.2
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 5.2e-36 156.8 295 43.7
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 6.8e-36 156.4 289 42.6
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-35 155.2 263 45.6
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 4.4e-35 153.7 296 42.6
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 5.8e-35 153.3 297 46.8
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 5.8e-35 153.3 297 46.8
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 5.8e-35 153.3 300 39.0
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 7.5e-35 152.9 299 39.5
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.3e-34 152.1 295 42.7
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 2.2e-34 151.4 297 44.8
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.9e-34 151.0 297 46.5
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.9e-34 151.0 285 40.0
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 6.4e-34 149.8 296 41.6
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 8.3e-34 149.4 296 39.9
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.1e-33 149.1 297 46.8
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.1e-33 149.1 297 46.1
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.1e-33 149.1 297 46.5
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.4e-33 148.7 260 41.9
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 1.9e-33 148.3 292 44.5
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.6e-32 145.2 286 39.9
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 3.5e-32 144.1 300 44.3
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 1.3e-31 142.1 298 40.9
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 1.3e-31 142.1 293 39.6
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 1.3e-31 142.1 297 44.1
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.0e-31 141.0 270 40.0
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 5.0e-31 140.2 294 43.2
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 5.0e-31 140.2 292 40.1
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.1e-30 139.0 270 46.7
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 1.5e-30 138.7 301 40.5
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 1.5e-30 138.7 276 46.4
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 1.5e-30 138.7 289 38.1
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 1.9e-30 138.3 299 42.5
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 2.5e-30 137.9 300 42.0
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 4.3e-30 137.1 301 38.9
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 5.6e-30 136.7 292 39.7
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 7.3e-30 136.3 285 38.6
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 7.3e-30 136.3 304 40.1
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 9.5e-30 136.0 296 42.9
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 1.6e-29 135.2 297 38.0
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 2.8e-29 134.4 295 38.0
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 8.0e-29 132.9 296 45.3
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 1.8e-28 131.7 295 45.8
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 2.3e-28 131.3 303 39.6
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.8e-28 129.8 309 35.6
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 6.8e-28 129.8 297 38.7
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 1.2e-27 129.0 296 38.9
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 1.5e-27 128.6 304 43.1
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.5e-27 128.6 299 44.8
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 2.6e-27 127.9 296 38.9
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 2.6e-27 127.9 219 42.0
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 4.4e-27 127.1 309 35.3
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 4.4e-27 127.1 291 45.7
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 4.4e-27 127.1 304 37.8
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 7.5e-27 126.3 296 37.8
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 7.5e-27 126.3 296 39.2
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 9.8e-27 125.9 303 42.9
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 6.4e-26 123.2 291 44.7
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.4e-25 122.1 315 34.0
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.4e-25 121.3 291 37.5
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 2.4e-25 121.3 297 42.1
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 7.0e-25 119.8 304 36.8
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 3.5e-24 117.5 282 37.6
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.5e-24 117.5 315 34.0
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.3e-23 115.5 217 41.0
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.0e-23 114.4 315 33.7
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 8.6e-23 112.8 267 36.0
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.1e-22 112.5 295 43.1
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.9e-22 111.7 300 35.7
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 1.6e-21 108.6 295 39.3
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 2.1e-21 108.2 302 36.8
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 2.1e-21 108.2 302 36.8
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 2.1e-21 108.2 287 35.5
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 2.8e-21 107.8 303 36.6
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.8e-21 107.8 301 33.6
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 2.8e-21 107.8 289 35.3
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 3.6e-21 107.5 300 36.3
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 4.7e-21 107.1 283 34.6
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.2e-21 106.7 320 32.2
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 1.8e-20 105.1 299 33.8
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 3.1e-20 104.4 306 34.3
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 8.9e-20 102.8 299 41.8
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 1.2e-19 102.4 256 45.7
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.5e-19 102.1 295 36.9
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 2.0e-19 101.7 255 33.7
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 3.4e-19 100.9 304 33.9
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 9.9e-19 99.4 299 33.8
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 1.7e-18 98.6 299 42.5
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.7e-18 98.6 299 41.1
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.4e-18 96.7 282 32.6
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.4e-18 96.7 282 32.6
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 9.2e-17 92.8 286 40.6
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 9.2e-17 92.8 129 45.0
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 2.1e-16 91.7 286 37.1
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.3e-15 89.0 185 38.9
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.3e-15 89.0 302 33.8
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.5e-14 85.5 279 30.5
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 1.5e-14 85.5 302 40.7
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.9e-14 85.1 291 33.0
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.9e-14 85.1 183 38.8
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.9e-14 85.1 232 36.6
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 5.6e-14 83.6 302 40.7
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 7.3e-14 83.2 126 45.2
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 9.5e-14 82.8 252 32.1
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.8e-12 78.6 89 53.9
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 1.8e-12 78.6 265 31.7
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 4.0e-12 77.4 181 35.9
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 5.2e-12 77.0 267 33.0
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 8.9e-12 76.3 144 41.7
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 2.6e-11 74.7 270 29.6
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 2.6e-11 74.7 254 30.7
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 3.4e-11 74.3 296 36.8
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.4e-11 73.9 230 30.4
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.9e-10 71.2 158 34.2
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 3.8e-10 70.9 230 30.0
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 3.8e-10 70.9 299 36.5
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 6.4e-10 70.1 274 29.9
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 6.4e-10 70.1 298 36.9
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 6.4e-10 70.1 303 35.0
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 8.4e-10 69.7 158 33.5
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.4e-10 69.7 255 30.6
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 5.4e-09 67.0 69 56.5
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 9.2e-09 66.2 161 34.8
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 2.7e-08 64.7 180 32.2
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 2.7e-08 64.7 254 29.1
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 6.0e-08 63.5 259 30.9
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-07 62.4 155 35.5
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 1.3e-07 62.4 277 29.6
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.7e-07 62.0 267 31.1
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 2.3e-07 61.6 289 29.4
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 5.1e-07 60.5 55 60.0
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.1e-06 59.3 120 37.5
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 1.5e-06 58.9 166 33.1
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.9e-06 58.5 56 57.1
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 5.6e-06 57.0 65 50.8
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 5.6e-06 57.0 126 37.3
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 5.6e-06 57.0 271 28.8


User provided reference genes

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