Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 6.0e-277 957.2 612 100.0
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 6.0e-160 568.5 611 66.9
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 2.9e-146 523.1 603 61.0
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 2.0e-134 483.8 614 61.1
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 1.8e-132 477.2 585 60.7
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 5.0e-122 442.6 620 55.3
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 6.5e-122 442.2 618 53.9
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 5.5e-121 439.1 610 55.7
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 6.1e-120 435.6 635 46.5
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 1.0e-119 434.9 599 56.9
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 1.8e-116 424.1 602 50.8
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 4.1e-116 422.9 601 55.1
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 2.0e-115 420.6 601 52.1
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 7.7e-115 418.7 613 54.6
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 1.3e-114 417.9 603 56.6
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 2.3e-111 407.1 598 47.5
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 2.3e-111 407.1 599 52.6
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 3.0e-111 406.8 613 47.6
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 1.2e-110 404.8 624 56.4
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 1.7e-109 401.0 602 54.8
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 1.7e-109 401.0 612 55.6
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 4.8e-109 399.4 601 56.6
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 2.4e-108 397.1 606 57.1
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 1.6e-107 394.4 603 55.1
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 7.7e-107 392.1 599 55.8
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.3e-106 390.6 625 38.7
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 6.5e-106 389.0 602 57.0
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 5.5e-105 386.0 641 49.8
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 9.5e-105 385.2 606 55.9
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 1.2e-104 384.8 601 47.4
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 1.6e-104 384.4 601 52.1
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 1.6e-104 384.4 606 51.3
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 4.7e-104 382.9 626 51.6
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 8.9e-103 378.6 636 42.3
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 1.5e-102 377.9 599 51.3
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 2.0e-102 377.5 621 39.6
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 2.6e-102 377.1 601 53.1
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 9.8e-102 375.2 602 50.2
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 2.7e-99 367.1 606 51.2
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 3.5e-99 366.7 609 53.0
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 2.3e-98 364.0 628 41.7
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 1.1e-97 361.7 598 52.2
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.9e-97 360.9 632 44.5
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 1.6e-96 357.8 604 53.3
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.8e-96 357.1 586 52.6
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 6.1e-96 355.9 602 50.8
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 1.4e-95 354.8 602 45.2
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 1.8e-95 354.4 603 47.1
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 2.3e-95 354.0 602 50.8
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 3.0e-95 353.6 602 45.0
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 3.0e-95 353.6 598 53.0
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 6.8e-95 352.4 607 51.1
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 1.5e-94 351.3 602 53.0
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 3.4e-94 350.1 602 50.8
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 3.7e-93 346.7 605 50.4
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 6.4e-93 345.9 520 54.0
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 8.3e-93 345.5 621 52.0
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 9.2e-92 342.0 604 42.5
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 2.3e-90 337.4 542 49.6
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 8.6e-90 335.5 613 49.9
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 2.5e-89 334.0 601 49.8
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 2.5e-89 334.0 601 49.8
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 9.5e-89 332.0 606 49.7
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 1.2e-88 331.6 604 49.2
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 2.1e-88 330.9 617 45.5
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 4.4e-86 323.2 600 51.7
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 7.5e-86 322.4 500 52.0
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 1.7e-85 321.2 499 56.3
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 1.1e-84 318.5 603 50.4
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 7.8e-83 312.4 455 58.5
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 1.0e-82 312.0 601 50.6
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 1.3e-82 311.6 600 47.0
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 1.3e-82 311.6 600 47.0
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 7.3e-81 305.8 604 51.2
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 1.6e-80 304.7 600 46.7
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 9.9e-78 295.4 542 49.8
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 2.2e-77 294.3 606 43.4
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 4.1e-76 290.0 382 50.8
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 4.6e-75 286.6 609 48.4
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 1.0e-74 285.4 612 47.4
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 3.0e-74 283.9 641 41.5
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 5.6e-73 279.6 568 43.3
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 1.6e-72 278.1 601 48.1
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 6.8e-71 272.7 602 49.5
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.9e-68 264.6 411 44.8
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 3.5e-67 260.4 600 42.5
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 1.3e-66 258.5 603 44.9
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 5.1e-66 256.5 486 52.3
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 1.1e-63 248.8 637 27.8
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 2.4e-63 247.7 576 49.8
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 5.2e-63 246.5 606 47.9
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 9.9e-62 242.3 599 46.1
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.3e-61 241.9 605 36.5
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.3e-61 241.9 605 36.5
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 2.2e-61 241.1 600 46.0
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 1.2e-59 235.3 604 46.4
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 1.5e-57 228.4 605 40.5
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 2.8e-56 224.2 595 44.4
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 5.3e-55 219.9 391 53.5
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 5.3e-55 219.9 522 46.0
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 2.0e-54 218.0 542 42.6
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 1.9e-52 211.5 513 41.5
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 8.7e-50 202.6 606 45.2
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 1.2e-38 165.6 415 50.8
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 2.5e-33 147.9 157 54.1
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.2e-30 139.0 320 31.2
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.3e-24 119.0 157 48.4
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 3.1e-23 114.4 213 46.0
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 3.1e-15 87.8 193 51.8
Hma1.2p1_0450F.1_g155520 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 6.3e-08 63.5 48 66.7
Hma1.2p1_1530F.1_g289190 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 6.3e-08 63.5 48 66.7
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 1.8e-07 62.0 51 64.7
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 4.1e-07 60.8 581 30.6
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 4.1e-07 60.8 52 59.6
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 1.2e-06 59.3 52 57.7


User provided reference genes

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