Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.3e-146 523.1 267 100.0
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.2e-88 330.5 292 63.0
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 2.1e-85 319.7 276 63.4
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.8e-84 316.6 285 60.7
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 6.6e-79 298.1 289 59.2
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.3e-71 273.1 293 52.9
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.5e-70 270.4 230 62.2
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.8e-68 263.5 293 52.6
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.8e-68 263.5 312 48.4
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 4.5e-67 258.8 288 52.1
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.2e-64 250.8 297 49.8
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.6e-64 250.4 291 47.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.3e-63 246.5 292 47.9
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 6.7e-63 245.0 272 51.1
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.1e-62 244.2 279 50.5
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.3e-62 242.7 293 49.8
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.3e-62 242.7 270 50.7
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 5.6e-62 241.9 278 49.6
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 6.5e-58 228.4 289 48.1
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 6.5e-58 228.4 312 46.8
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.2e-57 225.7 289 49.1
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.6e-56 223.8 287 46.7
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.3e-55 219.9 312 46.5
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 5.1e-55 218.8 337 41.2
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.1e-54 217.6 291 45.4
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.3e-54 215.7 301 45.5
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 7.4e-54 214.9 284 45.8
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 6.3e-53 211.8 282 48.6
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 6.3e-53 211.8 247 49.8
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 6.3e-53 211.8 368 38.6
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.8e-52 210.3 291 44.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.4e-52 209.9 274 46.4
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 1.5e-51 207.2 340 40.6
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.6e-51 206.5 286 45.8
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.9e-50 203.0 283 42.4
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.8e-50 202.6 297 42.1
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.4e-49 200.7 305 40.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.9e-49 200.3 285 45.3
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 5.5e-49 198.7 392 36.2
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 7.2e-49 198.4 281 43.4
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.2e-48 197.6 291 41.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 2.1e-48 196.8 293 43.0
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.7e-48 196.4 240 45.4
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 4.6e-48 195.7 281 43.4
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 4.6e-48 195.7 257 45.5
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 6.1e-48 195.3 281 43.1
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 1.3e-47 194.1 298 41.3
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.8e-47 193.7 273 43.2
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.3e-47 193.4 265 46.8
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.0e-47 193.0 282 40.4
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 3.9e-47 192.6 284 40.5
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.9e-47 192.6 283 41.0
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.5e-46 189.9 315 41.0
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.5e-46 189.9 318 41.5
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.5e-46 189.9 280 41.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.5e-46 189.9 292 40.1
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.3e-45 187.6 372 37.1
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.6e-45 187.2 338 39.6
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 2.8e-45 186.4 300 41.0
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.7e-45 186.0 341 39.0
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 4.8e-45 185.7 290 41.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 4.8e-45 185.7 270 42.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.2e-45 184.9 168 60.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.2e-45 184.9 168 60.1
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.2e-45 184.9 348 39.1
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.4e-44 184.1 333 39.9
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 5.3e-44 182.2 286 41.6
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.2e-43 181.0 292 42.1
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 1.5e-43 180.6 273 42.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.5e-43 180.6 397 35.0
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-43 179.9 283 37.8
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.6e-43 179.9 372 36.6
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 4.5e-43 179.1 328 38.1
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 5.9e-43 178.7 293 39.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.9e-42 176.4 287 40.1
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.8e-42 176.0 270 43.7
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 8.5e-42 174.9 301 38.9
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 8.5e-42 174.9 313 39.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.4e-41 174.1 289 39.1
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.9e-41 173.7 352 37.2
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.2e-41 172.9 292 37.0
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 3.2e-41 172.9 232 47.4
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 5.5e-41 172.2 372 35.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 7.2e-41 171.8 322 37.3
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.2e-40 171.0 292 38.7
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 2.1e-40 170.2 273 38.8
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.1e-40 170.2 237 43.0
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-40 169.9 275 39.3
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.6e-40 169.1 293 39.9
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.4e-39 167.5 325 35.1
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 2.3e-39 166.8 336 36.0
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.1e-38 164.5 290 37.6
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 7.4e-38 161.8 153 52.3
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 9.7e-38 161.4 347 35.4
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.2e-37 160.2 397 32.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 2.8e-37 159.8 269 39.0
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.7e-37 159.5 274 38.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.7e-37 159.5 339 35.7
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.8e-37 159.1 264 43.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 6.3e-37 158.7 290 36.9
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.2e-37 158.3 161 54.0
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.4e-36 157.5 166 49.4
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 5.3e-36 155.6 220 46.4
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.1e-36 154.8 271 36.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 2.6e-35 153.3 352 34.4
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.3e-34 151.0 269 38.3
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 5.0e-34 149.1 370 31.1
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.1e-33 147.9 319 33.9
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.9e-33 147.1 267 36.0
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-33 146.4 173 45.7
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.2e-33 146.0 248 39.5
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 7.2e-33 145.2 251 40.2
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.7e-32 143.3 258 38.0
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 6.1e-32 142.1 271 35.8
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.4e-31 141.0 166 47.6
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.8e-31 140.6 257 37.0
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.8e-31 140.6 257 37.0
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.9e-31 139.4 279 37.3
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.9e-31 139.4 256 37.1
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.9e-31 139.4 256 37.1
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 5.1e-31 139.0 162 47.5
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 6.7e-31 138.7 155 47.1
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 8.8e-31 138.3 248 37.5
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 8.8e-31 138.3 180 43.9
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.5e-30 137.5 175 45.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.6e-30 136.7 264 33.3
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.6e-30 136.7 325 33.8
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 3.3e-30 136.3 228 40.8
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 5.7e-30 135.6 252 36.9
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 9.7e-30 134.8 204 39.2
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.3e-29 134.4 237 38.0
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 2.4e-28 130.2 206 40.8
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 3.1e-28 129.8 207 40.6
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.1e-28 129.8 252 36.9
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 3.1e-28 129.8 248 36.7
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.2e-27 127.9 248 40.3
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 7.7e-27 125.2 198 40.9
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-26 124.4 231 35.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.7e-26 124.0 173 41.0
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 6.1e-24 115.5 148 45.9
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 8.0e-24 115.2 256 35.5
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 1.8e-23 114.0 101 55.4
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 5.2e-23 112.5 251 34.3
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.7e-23 112.1 287 33.1
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-22 109.8 122 45.1
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 9.7e-22 108.2 173 41.0
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 6.3e-21 105.5 246 32.9
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.0e-18 98.2 224 33.5
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.2e-18 97.1 91 46.2
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 4.2e-17 92.8 220 32.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.4e-14 82.8 98 39.8
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.7e-14 82.4 160 36.9
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 7.5e-14 82.0 209 32.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 9.8e-14 81.6 95 49.5
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 6.5e-10 68.9 86 46.5
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.5e-09 67.0 126 38.9
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 8.0e-08 62.0 273 26.7
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 8.0e-08 62.0 55 50.9
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.0e-07 61.6 76 44.7
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.0e-07 61.6 68 54.4
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.0e-07 59.7 225 26.2
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 4.0e-07 59.7 121 34.7
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 9.8e-06 55.1 90 37.8


User provided reference genes

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