Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 3.5e-64 248.1 119 100.0
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 7.4e-22 107.5 80 70.0
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.6e-21 106.3 79 69.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 8.2e-21 104.0 81 66.7
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.5e-19 99.8 79 65.8
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.6e-19 99.0 79 64.6
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 7.7e-19 97.4 78 65.4
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.7e-18 96.3 81 64.2
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.2e-18 95.9 84 60.7
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.2e-18 95.9 76 64.5
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.2e-18 95.9 211 37.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 2.2e-18 95.9 80 63.8
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 2.9e-18 95.5 79 64.6
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.9e-18 95.5 79 63.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.8e-18 95.1 79 63.3
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.8e-18 95.1 79 63.3
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.8e-18 95.1 79 63.3
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 5.0e-18 94.7 84 60.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 5.0e-18 94.7 76 64.5
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 5.0e-18 94.7 76 64.5
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 8.5e-18 94.0 77 64.9
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 8.5e-18 94.0 77 63.6
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.1e-17 93.6 84 60.7
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.9e-17 92.8 81 64.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.9e-17 92.8 81 64.2
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.9e-17 92.8 80 62.5
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 2.5e-17 92.4 82 63.4
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 3.2e-17 92.0 78 64.1
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 4.2e-17 91.7 82 64.6
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.2e-17 91.7 78 61.5
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 5.5e-17 91.3 81 64.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 5.5e-17 91.3 81 64.2
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 5.5e-17 91.3 81 64.2
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 7.2e-17 90.9 80 61.2
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 9.4e-17 90.5 78 61.5
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.2e-16 90.1 81 61.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.2e-16 90.1 82 58.5
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.6e-16 89.7 81 63.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.6e-16 89.7 80 63.8
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.1e-16 89.4 77 61.0
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 3.6e-16 88.6 76 61.8
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.1e-16 87.8 84 57.1
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.9e-16 87.4 78 60.3
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 7.9e-16 87.4 78 60.3
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.0e-15 87.0 78 60.3
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.0e-15 87.0 83 62.7
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.0e-15 87.0 79 60.8
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 3.0e-15 85.5 76 60.5
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 3.0e-15 85.5 77 59.7
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.0e-15 85.5 78 60.3
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 5.1e-15 84.7 87 57.5
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.1e-14 83.6 77 59.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.5e-14 83.2 84 58.3
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.5e-14 83.2 80 60.0
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.5e-14 83.2 73 58.9
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.0e-14 82.8 79 58.2
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 2.5e-14 82.4 78 59.0
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.5e-14 82.4 80 58.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 4.3e-14 81.6 81 54.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 4.3e-14 81.6 82 56.1
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 1.3e-13 80.1 72 56.9
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.7e-13 79.7 79 54.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 1.7e-13 79.7 76 56.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 2.2e-13 79.3 79 54.4
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 3.7e-13 78.6 73 58.9
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 3.7e-13 78.6 85 55.3
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 6.3e-13 77.8 78 56.4
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 6.3e-13 77.8 76 57.9
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 8.2e-13 77.4 79 55.7
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 8.2e-13 77.4 76 56.6
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 4.1e-12 75.1 82 53.7
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.1e-12 75.1 72 54.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 6.9e-12 74.3 216 31.9
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 1.5e-11 73.2 76 53.9
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.6e-11 72.4 80 56.2
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 5.9e-11 71.2 72 52.8
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 5.9e-11 71.2 78 51.3
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 7.7e-11 70.9 74 55.4
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 7.7e-11 70.9 73 53.4
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.0e-10 70.5 80 50.0
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.0e-10 70.5 78 50.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.7e-10 69.7 78 51.3
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.7e-10 69.7 78 51.3
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.2e-10 69.3 80 53.8
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 2.2e-10 69.3 80 53.8
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.9e-10 68.9 73 58.9
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 6.5e-10 67.8 77 53.2
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 6.5e-10 67.8 81 49.4
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 6.5e-10 67.8 90 51.1
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 8.5e-10 67.4 79 49.4
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.5e-09 65.9 83 48.2
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 3.2e-09 65.5 78 50.0
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.2e-09 65.1 94 44.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 7.2e-09 64.3 94 44.7
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.6e-08 63.2 94 43.6
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.6e-08 63.2 75 50.7
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.7e-08 62.4 99 42.4
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 7.9e-08 60.8 85 49.4
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.4e-07 60.1 90 43.3
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 3.0e-07 58.9 56 55.4
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.9e-07 58.5 85 48.2
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 5.1e-07 58.2 85 48.2
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 5.1e-07 58.2 85 48.2
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 5.1e-07 58.2 85 48.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.1e-07 58.2 85 48.2
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 6.7e-07 57.8 75 48.0
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-06 57.0 55 58.2
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 2.0e-06 56.2 88 40.9
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 4.4e-06 55.1 90 45.6
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 7.4e-06 54.3 177 31.6


User provided reference genes

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