Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 0.0e+00 1515.0 887 100.0
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.6e-252 875.9 942 60.5
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.7e-243 846.7 966 57.8
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 5.7e-236 821.6 911 58.4
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 2.8e-235 819.3 913 62.7
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.6e-217 760.4 946 53.8
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 3.6e-214 749.2 923 53.3
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 2.4e-210 736.5 929 54.7
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.5e-207 727.2 951 51.2
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 7.3e-207 724.9 956 51.0
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.4e-205 720.7 950 54.9
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 7.1e-202 708.4 968 50.6
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.7e-200 703.7 961 51.3
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.9e-200 702.6 926 50.8
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.5e-199 700.7 898 50.9
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 1.4e-197 694.1 952 49.7
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.9e-195 686.4 920 55.0
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 2.2e-187 660.2 868 54.3
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.9e-186 657.1 864 54.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 2.7e-185 653.3 878 50.3
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.7e-185 653.3 947 48.0
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.1e-181 641.3 908 50.8
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.8e-181 640.6 875 53.8
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.8e-181 640.6 875 53.8
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 2.4e-181 640.2 882 49.9
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.5e-180 637.5 921 49.4
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 9.9e-180 634.8 824 50.6
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 2.2e-179 633.6 833 51.7
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.1e-178 631.3 884 48.9
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.4e-178 629.0 852 48.9
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.1e-177 627.1 870 53.1
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 3.0e-176 623.2 927 47.5
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 8.7e-176 621.7 869 49.3
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 8.7e-176 621.7 867 51.0
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.9e-175 620.5 936 47.9
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 3.7e-174 616.3 874 50.9
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 6.2e-174 615.5 868 53.0
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 3.1e-173 613.2 898 48.3
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-172 611.3 932 50.0
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-172 610.5 850 51.9
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.6e-172 610.1 940 46.9
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 5.8e-172 609.0 790 55.6
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.2e-171 607.1 875 48.8
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.9e-171 605.9 873 46.3
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-170 604.0 924 49.6
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 4.2e-170 602.8 879 47.1
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.5e-170 602.4 921 45.8
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 9.3e-170 601.7 916 48.6
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.7e-169 600.1 873 45.9
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-169 599.0 912 50.9
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-169 599.0 913 50.4
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.0e-168 598.2 873 45.8
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 3.0e-168 596.7 928 46.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.7e-168 595.1 873 45.6
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 1.1e-167 594.7 884 51.7
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-167 593.2 917 49.9
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.3e-166 591.3 845 46.2
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.3e-166 591.3 846 49.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.6e-166 590.9 898 47.3
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 6.2e-166 589.0 919 50.6
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.0e-164 583.9 925 45.6
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.3e-163 581.3 879 51.5
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 7.1e-162 575.5 864 47.5
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.2e-161 574.7 804 55.3
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.6e-161 574.3 892 50.1
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 4.6e-161 572.8 875 45.1
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.1e-161 572.4 878 47.5
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.5e-159 567.8 901 45.8
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 5.9e-156 555.8 894 46.4
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 5.9e-156 555.8 895 45.8
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 1.3e-155 554.7 898 49.6
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.3e-155 554.7 901 48.5
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 2.2e-155 553.9 913 44.1
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 5.5e-154 549.3 974 43.7
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.1e-153 547.4 901 44.8
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.4e-152 544.7 842 44.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 8.8e-152 542.0 767 49.0
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.1e-151 541.6 890 48.1
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.5e-151 541.2 967 44.5
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.5e-151 541.2 893 43.9
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.5e-151 540.4 932 42.5
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.1e-149 535.0 950 46.5
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 1.8e-149 534.3 780 50.8
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.5e-148 531.2 987 43.1
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 5.9e-148 529.3 874 46.5
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 2.2e-147 527.3 883 46.3
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 2.6e-143 513.8 900 45.7
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.4e-141 508.1 838 47.3
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.1e-141 506.9 471 60.9
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.2e-140 505.0 896 42.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.3e-139 501.5 875 45.6
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 2.9e-139 500.4 839 47.8
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 4.2e-138 496.5 899 44.3
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 9.4e-138 495.4 853 47.6
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 6.1e-137 492.7 882 46.5
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-135 488.4 825 43.9
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.3e-134 485.0 862 46.2
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 6.3e-134 482.6 889 40.3
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 1.4e-133 481.5 854 45.0
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 2.9e-131 473.8 877 44.7
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 2.9e-131 473.8 925 43.2
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.5e-130 471.5 904 41.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 3.7e-126 456.8 886 44.0
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 4.8e-126 456.4 747 52.7
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 3.1e-125 453.8 852 39.2
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 2.7e-124 450.7 772 44.8
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 6.5e-123 446.0 854 40.2
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.0e-120 438.7 898 43.3
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 3.1e-117 427.2 883 43.4
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 3.7e-110 403.7 865 41.6
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.3e-106 390.2 890 42.4
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 5.6e-106 389.8 536 45.9
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 1.5e-103 381.7 832 36.9
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 3.4e-103 380.6 606 45.7
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.0e-100 371.3 842 38.6
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.4e-95 353.6 237 74.7
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 9.2e-93 345.9 455 49.0
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 2.4e-85 321.2 531 46.9
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 3.9e-83 313.9 592 44.1
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 8.1e-65 253.1 542 44.3
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-63 248.1 418 45.0
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.9e-63 246.1 397 43.1
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 3.1e-56 224.6 214 63.1
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.9e-51 207.6 423 43.0
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.3e-50 204.5 184 59.8
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 1.8e-43 182.2 852 31.6
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.8e-43 182.2 395 41.5
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.6e-41 175.6 421 39.4
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.2e-41 175.3 191 50.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 4.6e-36 157.5 156 53.2
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.8e-33 147.5 633 31.3
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.4e-29 136.0 235 37.0
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 6.1e-28 130.6 626 27.2
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-24 119.8 98 59.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-24 119.8 155 47.7
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-24 119.8 98 59.2
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-23 114.8 158 48.1
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 5.9e-23 114.0 155 47.1
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-19 103.2 371 32.3
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 3.0e-19 101.7 272 41.2
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 7.5e-18 97.1 245 52.7
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-17 96.3 434 35.3
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-16 93.2 228 54.4
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.3e-16 90.9 142 44.4
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.7e-14 85.9 257 28.4
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 3.8e-14 84.7 107 49.5
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.8e-14 84.7 237 37.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 3.2e-13 81.6 120 43.3
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 9.4e-13 80.1 144 43.1
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.8e-11 75.9 65 63.1
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.8e-11 73.9 159 32.1
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.5e-10 72.8 149 34.9
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.5e-10 72.8 149 34.9
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 7.5e-10 70.5 57 59.6
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 9.8e-10 70.1 56 60.7
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 1.1e-08 66.6 53 60.4
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.0e-08 63.9 176 34.1
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-07 62.0 97 39.2
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 3.5e-07 61.6 47 63.8
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 3.5e-07 61.6 47 63.8
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 2.2e-06 58.9 44 61.4
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 8.5e-06 57.0 45 71.1


User provided reference genes

Program Settings