Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 2.4e-110 402.1 198 100.0
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 3.9e-76 288.5 190 73.7
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 6.6e-76 287.7 199 73.9
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 3.4e-72 275.4 197 68.0
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 3.8e-71 271.9 195 67.7
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 9.3e-70 267.3 196 67.3
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.6e-66 256.5 195 65.1
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 4.0e-65 251.9 201 63.7
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 5.3e-65 251.5 203 62.1
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.6e-64 249.2 192 64.1
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 3.4e-64 248.8 192 67.7
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 4.5e-64 248.4 195 63.1
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 4.5e-64 248.4 195 63.1
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 4.5e-64 248.4 195 63.1
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 5.8e-64 248.1 188 63.3
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 2.5e-62 242.7 190 63.7
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 3.2e-62 242.3 192 66.1
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 5.5e-62 241.5 183 65.6
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 7.1e-62 241.1 187 62.6
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 3.5e-61 238.8 182 64.3
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 7.9e-61 237.7 182 63.7
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 2.3e-60 236.1 193 62.7
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 3.9e-60 235.3 188 62.2
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 8.7e-60 234.2 203 58.1
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 7.4e-59 231.1 192 58.3
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 7.4e-59 231.1 162 69.1
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 7.4e-59 231.1 185 61.6
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 1.3e-58 230.3 182 61.0
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 2.1e-58 229.6 203 56.7
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 4.8e-58 228.4 203 57.1
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 1.8e-57 226.5 183 60.1
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 1.8e-57 226.5 205 57.1
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 2.4e-57 226.1 174 60.9
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 3.1e-57 225.7 183 62.8
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 4.1e-57 225.3 185 60.0
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 4.1e-57 225.3 207 55.1
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 6.9e-57 224.6 180 62.2
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 1.2e-56 223.8 189 59.3
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 2.6e-56 222.6 169 65.7
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 2.6e-56 222.6 169 62.7
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 4.5e-56 221.9 181 59.1
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.7e-55 219.9 185 59.5
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 1.7e-55 219.9 185 60.5
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 2.2e-55 219.5 185 61.6
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 6.5e-55 218.0 203 54.7
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 8.4e-55 217.6 175 60.6
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 1.4e-54 216.9 191 56.5
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 1.4e-54 216.9 203 54.7
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 1.9e-54 216.5 184 59.2
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 3.2e-54 215.7 174 59.2
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 3.2e-54 215.7 180 60.0
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 3.2e-54 215.7 184 60.9
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 4.2e-54 215.3 176 58.0
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 5.5e-54 214.9 197 57.4
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 7.2e-54 214.5 162 62.3
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 7.2e-54 214.5 198 53.5
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 9.3e-54 214.2 189 57.1
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 2.1e-53 213.0 189 56.6
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 7.9e-53 211.1 183 57.4
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 1.3e-52 210.3 193 56.0
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 1.8e-52 209.9 164 62.8
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 2.3e-52 209.5 193 56.5
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 3.0e-52 209.1 186 59.1
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 5.1e-52 208.4 194 56.2
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 6.7e-52 208.0 193 56.5
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 8.7e-52 207.6 192 56.2
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 1.1e-51 207.2 198 52.5
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 1.9e-51 206.5 186 58.6
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 1.9e-51 206.5 184 57.6
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 2.5e-51 206.1 191 55.0
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 5.7e-51 204.9 193 54.4
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 5.7e-51 204.9 168 61.9
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 7.4e-51 204.5 186 55.4
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.6e-50 203.4 196 52.0
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.6e-50 203.4 171 57.3
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 1.6e-50 203.4 186 52.7
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 4.8e-50 201.8 188 53.7
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 4.8e-50 201.8 188 53.7
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 6.3e-50 201.4 187 55.6
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 6.3e-50 201.4 168 61.3
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 8.2e-50 201.1 188 53.7
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 1.1e-49 200.7 181 57.5
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.4e-49 200.3 188 53.2
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.4e-49 200.3 188 53.7
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.8e-49 199.9 188 53.7
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 2.4e-49 199.5 181 53.6
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 4.1e-49 198.7 184 53.8
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 5.3e-49 198.4 192 54.2
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 5.3e-49 198.4 229 46.3
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 5.3e-49 198.4 190 55.3
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 6.9e-49 198.0 188 52.7
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 1.5e-48 196.8 196 51.5
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 1.5e-48 196.8 160 59.4
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 1.5e-48 196.8 179 57.0
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 2.0e-48 196.4 194 53.1
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 2.6e-48 196.1 176 58.0
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 3.4e-48 195.7 197 53.3
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 3.4e-48 195.7 188 54.3
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 5.9e-48 194.9 182 53.3
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 7.7e-48 194.5 185 51.9
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 1.7e-47 193.4 192 53.1
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 2.2e-47 193.0 169 55.6
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 1.1e-46 190.7 187 53.5
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 3.2e-46 189.1 196 50.0
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 3.2e-46 189.1 181 54.1
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 5.5e-46 188.3 188 52.7
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 5.5e-46 188.3 189 52.9
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 5.5e-46 188.3 188 52.7
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 5.5e-46 188.3 188 52.1
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 7.2e-46 188.0 188 52.1
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 7.2e-46 188.0 187 52.9
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 7.2e-46 188.0 188 52.1
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 2.1e-45 186.4 170 52.4
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 4.6e-45 185.3 174 54.6
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 3.9e-44 182.2 186 49.5
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 2.5e-43 179.5 204 48.5
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 2.5e-43 179.5 204 48.5
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 9.7e-43 177.6 174 51.1
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 1.3e-42 177.2 204 48.5
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 1.3e-42 177.2 204 48.5
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 1.3e-42 177.2 186 50.5
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 3.7e-42 175.6 168 54.8
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 4.8e-42 175.3 167 48.5
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 3.1e-41 172.6 167 49.1
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 6.9e-41 171.4 167 47.9
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 1.5e-40 170.2 197 48.7
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 1.7e-39 166.8 140 60.0
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 2.2e-39 166.4 143 59.4
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 1.1e-38 164.1 160 51.9
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 1.3e-34 150.6 181 47.0
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 8.2e-34 147.9 158 50.6
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 1.4e-33 147.1 129 55.0
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.3e-31 140.6 120 55.8
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 1.3e-31 140.6 145 50.3
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 5.2e-28 128.6 183 41.0
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 3.7e-26 122.5 89 64.0
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 1.7e-23 113.6 88 60.2
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 2.5e-22 109.8 139 43.2
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 2.1e-21 106.7 88 56.8
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 3.6e-21 105.9 140 47.1
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 5.9e-16 88.6 126 42.1
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 8.5e-15 84.7 77 53.2
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 1.2e-13 80.9 136 35.3
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 1.8e-12 77.0 64 56.2
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 1.7e-10 70.5 156 27.6
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 7.0e-09 65.1 72 45.8
CBR_g38724 Chara braunii HOM05D002446 ORTHO05D002941 2.0e-08 63.5 137 30.7
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 1.7e-07 60.5 55 49.1
arahy.Tifrunner.gnm1.ann1.PAI5YG Arachis hypogaea HOM05D005028 ORTHO05D006028 2.3e-07 60.1 51 56.9
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 2.9e-07 59.7 55 49.1


User provided reference genes

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