Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 0.0e+00 1633.6 804 100.0
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 0.0e+00 1139.0 794 71.0
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 0.0e+00 1115.9 811 68.4
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 2.4e-310 1068.5 817 64.5
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 9.0e-289 996.9 823 61.7
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 6.7e-284 980.7 820 59.4
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.2e-280 969.9 800 59.9
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 3.8e-279 964.9 774 62.3
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.2e-272 943.3 818 58.3
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.8e-271 938.3 786 59.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 5.5e-270 934.5 864 56.6
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 5.5e-270 934.5 819 58.4
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.0e-267 926.0 754 61.8
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 2.0e-267 926.0 803 58.2
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 9.7e-267 923.7 818 58.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 6.5e-263 911.0 793 56.6
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 2.7e-261 905.6 772 57.8
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 8.0e-261 904.0 816 56.1
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 2.3e-260 902.5 809 56.1
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.1e-259 900.2 811 57.3
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.4e-257 893.3 812 55.9
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 3.1e-257 892.1 816 56.5
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.2e-256 890.2 767 57.5
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 1.3e-255 886.7 807 56.0
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.3e-255 886.7 808 55.4
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.7e-255 886.3 804 56.0
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 2.5e-254 882.5 813 54.6
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.3e-252 875.9 775 56.6
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.3e-252 875.9 798 56.1
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 2.8e-250 869.0 818 54.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 3.7e-250 868.6 811 55.0
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 6.5e-247 857.8 763 55.8
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.5e-246 856.7 795 54.6
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.9e-246 856.3 798 54.4
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.9e-246 856.3 813 53.5
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.2e-246 854.4 824 53.3
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.6e-245 853.2 810 56.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.6e-245 852.0 786 54.2
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.0e-244 850.5 808 53.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.5e-243 846.7 807 55.1
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 4.4e-243 845.1 807 55.1
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 8.3e-242 840.9 764 56.5
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.1e-241 838.6 801 54.2
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.9e-240 834.7 762 55.6
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.3e-239 833.6 808 52.5
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.9e-239 832.4 812 53.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.8e-239 832.0 778 56.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 5.0e-239 831.6 813 52.5
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.9e-238 829.7 798 53.8
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 4.2e-238 828.6 776 53.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 9.5e-238 827.4 815 53.9
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 9.5e-238 827.4 720 58.1
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.6e-237 826.6 824 51.5
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 2.1e-237 826.2 780 53.5
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.4e-236 823.5 775 53.7
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 5.2e-236 821.6 809 52.4
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 6.8e-236 821.2 783 53.0
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.2e-235 820.5 819 52.0
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.7e-234 816.6 779 53.3
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 8.3e-234 814.3 797 52.2
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 5.4e-233 811.6 760 54.7
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 7.0e-233 811.2 801 51.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 9.2e-233 810.8 804 52.5
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.5e-232 808.5 778 54.8
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 7.8e-232 807.7 801 51.4
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.3e-231 807.0 791 52.3
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 5.0e-231 805.1 809 52.7
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.9e-230 803.1 802 51.4
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 4.3e-230 802.0 798 50.8
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.6e-229 800.0 751 54.3
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.6e-229 800.0 804 51.7
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 5.2e-228 795.0 808 49.9
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.4e-227 792.3 777 51.7
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.4e-227 792.3 794 51.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.4e-227 792.3 817 51.0
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.7e-226 790.0 775 52.4
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 3.7e-226 788.9 801 51.2
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.2e-224 783.9 801 49.4
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 2.7e-224 782.7 805 49.9
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-223 780.8 800 51.9
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.3e-223 780.4 830 49.8
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.0e-223 779.2 765 51.4
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.9e-223 778.9 800 51.2
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 3.3e-222 775.8 807 49.1
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 3.3e-222 775.8 807 49.1
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.6e-221 773.5 796 49.5
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.1e-221 773.1 815 48.8
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 5.2e-220 768.5 806 50.5
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.5e-219 766.9 848 49.5
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 2.0e-219 766.5 754 50.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.3e-218 763.8 797 51.6
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.1e-217 758.8 797 48.6
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.6e-216 756.9 722 54.2
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.8e-213 746.1 809 50.1
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 6.2e-213 745.0 680 56.3
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 3.1e-212 742.7 823 47.1
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 4.0e-212 742.3 801 47.4
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 6.8e-212 741.5 821 47.7
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.0e-211 740.0 806 47.1
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.7e-210 736.9 790 47.8
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 8.3e-210 734.6 717 54.3
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 7.8e-208 728.0 746 51.2
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.7e-207 726.9 794 48.5
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.3e-206 722.6 834 47.2
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.6e-206 721.8 800 48.8
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.8e-204 714.9 699 55.8
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.7e-199 700.3 731 49.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.7e-199 700.3 654 55.7
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 3.2e-193 679.5 815 44.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 4.6e-192 675.6 818 44.1
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.3e-189 667.5 678 50.6
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.1e-189 666.8 798 45.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.6e-189 666.0 868 43.4
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.4e-188 663.3 830 43.5
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 3.8e-186 656.0 683 50.4
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.3e-178 630.9 842 43.9
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 7.1e-177 625.2 921 40.7
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.0e-172 609.4 533 55.0
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.7e-168 596.7 799 41.3
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.3e-166 589.3 706 46.3
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.7e-157 560.8 664 45.2
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.4e-156 557.8 605 49.1
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.5e-147 527.7 719 42.6
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.8e-140 504.2 378 65.3
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-126 456.8 691 38.4
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.4e-126 456.4 725 37.9
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.4e-126 456.4 447 52.3
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.4e-124 451.4 309 71.5
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.2e-117 427.6 336 61.6
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.2e-117 427.6 339 64.6
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 9.2e-116 422.2 528 43.9
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-100 371.7 422 49.5
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.4e-100 371.7 398 48.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 3.2e-100 370.5 495 42.4
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 9.9e-86 322.4 880 28.2
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.8e-83 312.8 466 39.1
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.7e-82 311.6 781 27.9
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 2.1e-75 288.1 370 41.1
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 7.9e-75 286.2 296 49.0
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 9.0e-71 272.7 358 39.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.9e-65 255.0 520 32.1
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.8e-55 221.9 267 47.6
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.4e-55 221.5 207 57.0
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.6e-54 218.0 163 62.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 3.1e-39 167.9 150 53.3
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 8.8e-26 123.2 124 43.5
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.3e-21 109.4 135 44.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-20 106.3 120 47.5
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.7e-19 100.9 87 63.2
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-18 99.4 116 44.8
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 9.5e-12 76.6 63 47.6
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 8.8e-10 70.1 109 39.4
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.2e-08 65.5 35 80.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 6.3e-08 63.9 53 54.7
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.1e-07 63.2 71 47.9
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 3.1e-07 61.6 131 27.5
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.0e-06 58.9 39 53.8


User provided reference genes

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