Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 1.0e-204 716.5 347 100.0
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 1.6e-157 559.7 373 76.9
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 3.4e-152 542.0 372 74.5
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 2.6e-144 515.8 372 71.8
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 5.1e-140 501.5 410 64.4
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 3.4e-136 488.8 364 68.1
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 2.2e-135 486.1 363 67.8
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 6.5e-135 484.6 363 66.4
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 1.9e-134 483.0 366 67.5
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 7.2e-134 481.1 373 65.4
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 1.6e-133 479.9 363 66.7
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 2.1e-133 479.6 363 65.8
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.7e-133 479.2 369 67.2
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 3.6e-133 478.8 366 65.8
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 4.7e-133 478.4 360 66.9
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 6.1e-133 478.0 370 66.5
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 6.1e-133 478.0 360 67.2
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 1.0e-132 477.2 369 66.7
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.0e-132 477.2 360 66.9
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 1.4e-132 476.9 364 66.2
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 1.8e-132 476.5 363 65.8
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 1.8e-132 476.5 360 66.9
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 1.8e-132 476.5 364 65.9
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.3e-132 476.1 367 65.9
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 3.0e-132 475.7 376 65.4
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 5.1e-132 474.9 367 65.9
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 5.1e-132 474.9 373 65.1
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 6.7e-132 474.6 361 65.9
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 8.8e-132 474.2 364 66.2
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 1.1e-131 473.8 378 65.9
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.5e-131 473.4 367 65.4
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 2.6e-131 472.6 367 65.9
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 3.3e-131 472.2 346 68.5
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 3.3e-131 472.2 363 66.7
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 3.3e-131 472.2 373 63.5
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 3.3e-131 472.2 362 64.9
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 5.7e-131 471.5 375 63.5
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.3e-130 470.3 373 62.7
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.7e-130 469.9 371 63.3
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.7e-130 469.9 372 62.4
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 2.2e-130 469.5 371 65.0
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 2.2e-130 469.5 373 65.1
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 8.2e-130 467.6 350 67.4
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 1.4e-129 466.8 363 65.6
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 7.0e-129 464.5 369 63.4
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 7.0e-129 464.5 361 65.7
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 7.0e-129 464.5 354 66.1
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 9.1e-129 464.2 365 64.1
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 9.1e-129 464.2 386 62.4
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 1.2e-128 463.8 363 64.2
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 1.2e-128 463.8 365 64.9
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 2.0e-128 463.0 374 64.2
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 4.5e-128 461.8 361 65.9
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 7.7e-128 461.1 364 64.8
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 1.3e-127 460.3 363 65.3
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 1.9e-126 456.4 397 62.0
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 3.2e-126 455.7 374 62.0
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.2e-125 453.8 373 63.5
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 2.7e-125 452.6 340 66.8
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 3.0e-124 449.1 351 63.0
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 5.2e-124 448.4 364 61.3
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 8.8e-124 447.6 363 62.3
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 2.0e-123 446.4 357 62.5
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 2.6e-123 446.0 353 65.4
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 3.3e-123 445.7 374 60.7
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 3.3e-123 445.7 336 65.5
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 4.4e-123 445.3 364 61.3
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.3e-122 443.7 372 61.0
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 2.2e-122 443.0 364 59.9
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 1.4e-121 440.3 362 63.0
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 1.4e-121 440.3 346 64.2
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 1.8e-121 439.9 336 64.9
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 2.4e-121 439.5 361 61.5
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 3.1e-121 439.1 353 62.9
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 3.1e-121 439.1 348 61.2
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 9.1e-121 437.6 351 63.2
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.6e-120 436.8 370 58.9
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 2.6e-120 436.0 364 62.6
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 3.5e-120 435.6 369 58.5
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 1.3e-119 433.7 357 62.7
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 2.9e-119 432.6 357 61.3
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 1.9e-118 429.9 366 61.2
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 1.2e-117 427.2 384 59.4
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 1.0e-116 424.1 304 66.8
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 2.3e-116 422.9 405 56.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 8.8e-116 421.0 349 61.6
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 4.4e-115 418.7 317 66.9
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 1.1e-113 414.1 311 67.5
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.8e-113 413.3 388 57.0
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 2.4e-113 412.9 399 56.1
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 9.1e-113 411.0 371 58.2
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 1.3e-111 407.1 286 71.3
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 1.3e-111 407.1 355 57.7
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 2.9e-111 406.0 333 62.2
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 5.0e-111 405.2 293 67.9
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 3.2e-110 402.5 331 61.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 5.5e-110 401.7 361 59.6
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 2.3e-108 396.4 353 57.8
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 5.7e-107 391.7 334 58.7
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 2.7e-104 382.9 368 56.5
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 1.4e-100 370.5 331 56.2
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 1.2e-96 357.5 365 53.4
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 7.8e-96 354.8 357 54.1
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 8.9e-92 341.3 337 51.3
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 2.5e-86 323.2 190 81.6
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.5e-83 313.9 264 59.8
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 2.0e-83 313.5 216 70.8
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 2.2e-74 283.5 311 51.4
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 6.0e-72 275.4 227 61.7
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 8.1e-69 265.0 221 60.6
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 5.6e-62 242.3 220 59.1
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 6.6e-55 218.8 148 68.2
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 4.3e-38 162.9 141 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 1.4e-36 157.9 158 48.7
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 6.9e-36 155.6 151 49.7
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.8e-35 152.5 184 46.2
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.7e-30 136.0 117 59.8
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.4e-30 135.6 116 59.5
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.6e-29 134.4 117 59.0
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 7.7e-27 125.6 399 25.8
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 2.9e-26 123.6 65 89.2
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 5.0e-26 122.9 110 59.1
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 3.3e-22 110.2 131 43.5
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.8e-20 104.4 172 38.4
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 2.2e-18 97.4 105 53.3
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 2.7e-16 90.5 282 27.3
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 6.7e-15 85.9 80 56.2
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 8.8e-15 85.5 43 97.7
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 7.4e-14 82.4 92 51.1
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.0e-11 74.3 41 78.0
MD02G1103100 Malus domestica HOM05D005821 ORTHO05D006649 2.6e-11 73.9 58 60.3
MD12G1254600 Malus domestica HOM05D005821 ORTHO05D006649 2.6e-11 73.9 58 60.3
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.7e-11 72.4 72 54.2
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 8.5e-10 68.9 37 83.8
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 1.1e-09 68.6 52 63.5
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 2.7e-08 63.9 210 26.2
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 3.6e-08 63.5 43 65.1
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.6e-08 63.5 28 92.9
Cre10.g448650 Chlamydomonas reinhardtii HOM05D005821 ORTHO05D006649 2.3e-07 60.8 150 31.3
BcaNung03855 Brassica carinata HOM05D004444 ORTHO05D005246 4.0e-07 60.1 225 23.6
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 3.3e-06 57.0 51 58.8
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 3.3e-06 57.0 132 34.1


User provided reference genes

Program Settings