Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 3.4e-228 794.7 402 100.0
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.8e-113 412.9 282 77.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 7.8e-108 394.8 280 74.3
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.0e-107 394.4 281 74.4
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 6.2e-105 385.2 280 74.3
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.5e-103 380.6 276 72.5
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.6e-103 379.8 276 72.8
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 5.8e-103 378.6 285 73.3
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.3e-102 377.5 277 72.6
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 8.4e-102 374.8 278 70.9
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.5e-100 369.4 274 72.6
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 4.6e-100 369.0 277 72.2
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.3e-99 367.5 278 70.5
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 3.9e-99 365.9 276 72.1
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 1.9e-98 363.6 277 69.7
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 4.3e-98 362.5 275 70.2
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.3e-97 360.9 276 69.2
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.3e-97 360.9 277 70.4
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.3e-97 360.9 273 68.9
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 1.6e-97 360.5 275 68.7
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.1e-97 360.1 274 71.9
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 4.8e-97 359.0 274 69.3
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 8.1e-97 358.2 275 72.0
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 3.1e-96 356.3 277 67.5
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.2e-95 354.4 274 68.6
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 3.4e-95 352.8 274 67.5
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 4.5e-95 352.4 277 69.3
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 5.8e-95 352.1 282 66.7
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 9.9e-95 351.3 276 66.3
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.9e-94 349.7 284 66.2
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.9e-94 349.0 278 66.5
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 4.9e-94 349.0 275 66.9
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 1.1e-93 347.8 279 65.9
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.1e-93 347.8 277 67.9
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.1e-93 347.8 277 66.4
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 5.5e-93 345.5 279 67.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 7.1e-93 345.1 271 67.5
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 7.1e-93 345.1 279 67.0
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 9.3e-93 344.7 274 66.8
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.2e-92 344.4 274 66.8
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.1e-92 343.6 279 64.5
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.1e-92 343.6 274 66.8
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 2.7e-92 343.2 272 66.5
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.7e-92 343.2 272 66.5
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 2.7e-92 343.2 272 66.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 4.6e-92 342.4 268 67.5
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 6.0e-92 342.0 281 67.3
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 6.0e-92 342.0 273 67.8
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 7.9e-92 341.7 270 67.0
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 7.9e-92 341.7 274 66.1
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 2.3e-91 340.1 279 64.2
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.3e-91 340.1 273 65.9
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 3.0e-91 339.7 270 66.7
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 3.0e-91 339.7 281 66.2
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 8.7e-91 338.2 272 65.8
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.1e-90 337.8 272 65.8
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 1.1e-90 337.8 280 65.7
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.1e-90 337.8 285 66.3
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.5e-90 337.4 273 65.6
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.5e-90 336.7 273 66.3
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.5e-90 336.7 268 66.8
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 3.3e-90 336.3 276 63.8
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 5.6e-90 335.5 291 65.3
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.6e-90 334.7 270 64.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.6e-90 334.7 270 64.8
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.6e-89 334.0 232 72.0
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 2.1e-89 333.6 270 64.4
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-89 333.6 270 64.4
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.1e-89 333.6 270 64.4
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.8e-89 333.2 270 64.4
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 2.8e-89 333.2 274 65.0
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 3.7e-89 332.8 274 65.7
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 3.7e-89 332.8 270 64.1
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.8e-89 332.4 274 65.0
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 8.1e-89 331.6 276 65.6
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 8.1e-89 331.6 276 63.8
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.1e-88 331.3 288 64.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 1.4e-88 330.9 253 67.6
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 1.4e-88 330.9 274 62.4
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 4.0e-88 329.3 278 64.7
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.0e-88 329.3 271 64.6
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 5.3e-88 328.9 269 65.1
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 9.0e-88 328.2 273 63.7
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.6e-87 326.6 259 66.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.4e-87 326.2 259 66.8
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.0e-86 324.7 274 64.6
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.3e-86 324.3 275 63.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 4.9e-86 322.4 258 67.1
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 4.9e-86 322.4 258 67.1
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 6.5e-86 322.0 274 64.2
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.9e-85 320.5 255 65.9
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 5.5e-85 318.9 281 63.3
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.6e-84 317.4 276 60.1
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.8e-83 313.9 256 64.1
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.8e-83 313.9 240 67.1
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 3.0e-83 313.2 320 57.5
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 5.9e-79 298.9 271 59.8
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.0e-78 298.1 244 63.9
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.9e-77 293.9 278 59.4
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.9e-77 293.9 235 63.4
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.6e-76 289.7 193 76.7
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 3.9e-75 286.2 280 58.9
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.5e-74 284.3 233 60.9
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 2.5e-74 283.5 232 60.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.8e-67 260.8 238 59.7
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.5e-66 257.7 206 67.5
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.5e-66 257.7 206 67.5
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 9.7e-66 255.0 200 65.0
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.8e-64 250.8 233 57.5
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 1.1e-61 241.5 190 71.6
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.2e-61 240.0 206 56.8
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 7.2e-61 238.8 255 54.1
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.6e-60 237.7 193 60.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.4e-59 234.6 213 53.1
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.8e-59 234.2 210 55.7
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 3.0e-51 206.8 140 77.1
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.5e-50 204.5 154 64.9
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.0e-46 189.5 157 66.2
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.0e-38 165.2 166 47.6
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.2e-37 159.8 108 73.1
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 4.7e-36 156.4 175 41.1
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 9.8e-34 148.7 274 38.7
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 9.8e-34 148.7 274 38.7
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.7e-33 147.9 274 38.7
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 1.1e-32 145.2 112 64.3
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 3.0e-27 127.1 102 68.6
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.4e-26 123.6 75 82.7
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.7e-23 114.0 192 33.3
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.6e-20 104.8 78 66.7
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 5.2e-19 99.8 84 61.9
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.6e-15 88.2 76 60.5
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 4.6e-15 86.7 182 30.8
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.3e-14 85.1 88 58.0
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 5.6e-13 79.7 60 66.7
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 8.9e-11 72.4 39 89.7
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 3.5e-07 60.5 48 58.3
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 1.0e-06 58.9 115 36.5


User provided reference genes

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