Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 0.0e+00 1142.1 580 100.0
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.1e-158 564.3 608 54.4
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 1.4e-158 563.9 608 53.9
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 5.7e-144 515.4 620 51.0
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 6.0e-133 478.8 643 47.7
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.2e-127 460.3 345 74.5
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.6e-116 421.8 608 44.2
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.5e-115 420.2 611 42.7
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.0e-112 410.6 624 44.2
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 4.4e-112 409.5 593 43.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.6e-109 401.0 595 44.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.7e-108 397.5 655 41.2
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.3e-107 393.3 601 43.1
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.8e-103 379.8 622 43.4
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 8.7e-100 368.6 619 40.9
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 4.0e-97 359.8 622 40.7
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 5.8e-96 355.9 620 41.0
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 3.2e-94 350.1 607 39.4
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 7.9e-93 345.5 616 39.9
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 5.1e-92 342.8 617 39.7
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 5.1e-92 342.8 602 40.5
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.5e-91 340.5 613 40.1
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.4e-89 334.7 559 40.4
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.8e-89 334.3 596 38.6
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 9.0e-89 332.0 576 40.8
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.2e-88 331.6 595 39.2
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.0e-88 330.9 602 39.4
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 5.8e-88 329.3 628 37.9
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.1e-86 325.1 603 38.3
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.5e-86 323.9 600 39.7
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 5.5e-86 322.8 606 37.1
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.2e-85 321.6 526 39.9
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 6.0e-85 319.3 610 37.9
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.3e-84 318.2 571 38.7
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 1.8e-84 317.8 610 40.0
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.8e-84 317.8 608 36.0
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 1.8e-84 317.8 611 38.5
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 3.0e-84 317.0 601 37.8
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 6.7e-84 315.8 598 39.1
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 6.7e-84 315.8 601 37.1
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 8.7e-84 315.5 665 36.8
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.1e-83 315.1 605 37.7
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.5e-83 314.7 570 39.3
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.9e-83 314.3 522 39.5
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.9e-83 314.3 620 37.9
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 2.5e-83 313.9 619 37.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 4.3e-83 313.2 619 37.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 7.4e-83 312.4 526 39.4
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.3e-82 311.6 614 37.1
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 1.6e-82 311.2 592 37.0
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.4e-81 307.4 590 37.3
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 3.1e-81 307.0 616 36.9
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 6.9e-81 305.8 599 37.7
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 6.9e-81 305.8 606 36.1
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.2e-80 305.1 603 38.1
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.0e-80 304.3 613 37.5
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.4e-80 303.5 526 38.8
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.5e-80 303.1 622 36.5
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.8e-80 302.8 598 37.5
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 7.6e-80 302.4 612 37.3
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.1e-78 298.5 616 35.9
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.1e-78 298.5 597 37.4
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.9e-78 297.7 607 38.9
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.0e-76 292.0 711 34.2
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.8e-76 291.2 640 36.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.3e-74 285.0 589 36.7
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-74 283.5 610 35.7
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 5.3e-73 279.6 609 35.8
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.2e-71 274.2 609 36.5
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.4e-70 271.6 530 36.8
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.9e-70 271.2 627 35.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.2e-70 270.4 627 34.9
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.2e-70 270.4 627 34.9
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.6e-69 266.5 628 35.4
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.0e-68 265.4 415 42.2
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.4e-68 265.0 587 34.9
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 4.8e-66 256.5 567 34.9
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.4e-65 255.0 582 35.2
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 6.9e-65 252.7 579 35.6
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 5.9e-64 249.6 286 49.7
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 7.7e-64 249.2 581 34.4
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 7.7e-64 249.2 584 34.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.0e-63 248.8 587 34.9
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 3.8e-63 246.9 573 34.6
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 9.4e-62 242.3 583 34.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.2e-61 241.9 372 41.9
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.7e-61 240.7 581 33.9
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.6e-61 240.4 487 35.9
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 4.7e-61 240.0 581 33.9
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-60 238.4 581 34.1
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.8e-60 238.0 578 34.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.8e-60 238.0 578 34.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.8e-60 238.0 578 34.1
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 3.9e-60 236.9 582 33.8
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.1e-60 236.5 600 33.0
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 8.8e-60 235.7 313 45.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.1e-59 235.3 580 33.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.0e-59 234.6 578 33.2
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.6e-59 234.2 582 32.8
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 3.3e-59 233.8 581 33.0
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 4.4e-59 233.4 582 33.5
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.4e-57 227.6 530 34.0
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 4.1e-57 226.9 240 51.7
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.8e-55 220.3 627 32.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 8.5e-55 219.2 614 33.6
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.9e-54 218.0 495 33.9
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.5e-54 217.6 615 31.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 3.2e-54 217.2 611 31.9
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.1e-49 202.2 516 32.4
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.7e-48 197.6 580 31.4
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 2.7e-48 197.6 513 33.1
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.2e-44 183.3 150 60.0
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 2.6e-43 181.0 258 42.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-41 174.9 524 32.3
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.8e-41 174.9 455 33.0
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 9.1e-41 172.6 400 34.5
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 3.5e-40 170.6 272 40.1
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-39 169.1 272 39.7
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-39 169.1 281 39.5
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-39 168.3 270 40.4
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.5e-38 165.2 565 30.3
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.7e-37 161.0 617 28.2
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 8.0e-37 159.5 519 29.5
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 3.0e-36 157.5 100 89.0
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.2e-34 151.4 259 40.9
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 7.7e-32 142.9 148 48.6
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.3e-31 142.1 626 27.0
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.7e-31 141.7 155 52.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 7.3e-30 136.3 277 32.9
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 9.8e-27 125.9 445 30.8
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.2e-26 124.8 114 58.8
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 3.2e-25 120.9 412 29.6
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.3e-23 115.5 135 47.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 6.6e-23 113.2 105 54.3
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.1e-22 112.5 421 29.9
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.5e-22 112.1 132 43.9
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 5.6e-22 110.2 299 32.4
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.7e-21 107.1 275 31.3
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 5.8e-19 100.1 330 29.4
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.4e-17 95.5 311 27.7
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.1e-17 94.0 382 28.8
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.2e-11 75.9 95 41.1
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.2e-11 75.9 208 28.8
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.5e-11 75.5 122 42.6
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 4.4e-11 73.9 161 31.7
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 3.7e-10 70.9 128 32.8


User provided reference genes

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