Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 2.7e-169 598.6 302 100.0
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 2.5e-127 459.1 345 74.5
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 5.9e-92 341.7 362 53.3
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 6.1e-89 331.6 359 53.2
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 2.7e-84 316.2 370 50.0
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 3.4e-71 272.7 397 44.6
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 8.6e-67 258.1 337 45.1
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.1e-65 253.4 283 51.6
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.8e-64 250.4 368 45.1
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 9.8e-63 244.6 349 43.8
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 8.3e-62 241.5 360 43.6
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.2e-61 239.6 349 45.3
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 2.1e-60 236.9 278 48.6
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 1.0e-59 234.6 345 41.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.2e-57 227.6 285 46.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 2.1e-57 226.9 297 46.1
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.1e-57 226.9 308 45.1
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 6.2e-57 225.3 282 46.1
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.4e-56 224.2 357 40.9
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.4e-56 224.2 352 40.1
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.4e-56 224.2 352 40.1
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.8e-56 223.8 286 46.9
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.8e-56 223.8 352 39.8
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 5.2e-56 222.2 289 45.7
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 8.9e-56 221.5 335 40.6
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.6e-55 219.9 282 45.7
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.8e-55 218.8 295 46.4
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 4.1e-53 212.6 282 44.7
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.1e-53 211.8 276 46.0
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.6e-52 210.7 328 41.2
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 7.8e-52 208.4 347 40.1
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 1.3e-51 207.6 309 41.1
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.7e-51 207.2 288 43.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.3e-51 206.8 288 44.4
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.9e-51 206.1 274 46.0
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 5.1e-51 205.7 288 43.1
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 5.1e-51 205.7 325 40.9
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.1e-50 204.5 284 44.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.5e-50 204.1 284 44.0
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 4.3e-50 202.6 317 41.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 1.2e-49 201.1 317 41.0
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-49 201.1 210 51.4
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-49 201.1 210 51.4
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.2e-49 201.1 298 42.6
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.2e-49 201.1 283 43.5
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 4.7e-49 199.1 280 42.1
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.1e-48 198.0 354 37.6
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 1.8e-48 197.2 354 37.6
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.8e-48 197.2 245 48.2
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.4e-48 196.8 284 40.8
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 8.9e-48 194.9 286 40.9
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.0e-47 193.7 286 43.4
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 3.4e-47 193.0 291 41.2
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 4.4e-47 192.6 285 42.5
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 7.6e-47 191.8 300 42.0
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 7.6e-47 191.8 285 42.1
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 9.9e-47 191.4 285 42.1
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 9.9e-47 191.4 285 42.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 9.9e-47 191.4 285 42.1
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.7e-46 190.7 312 40.1
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 2.2e-46 190.3 282 41.8
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 2.2e-46 190.3 283 42.4
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.2e-46 190.3 286 39.5
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 2.9e-46 189.9 285 41.8
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 3.8e-46 189.5 339 41.3
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 4.9e-46 189.1 282 41.1
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.4e-45 187.6 296 41.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 3.2e-45 186.4 286 41.6
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 5.4e-45 185.7 282 41.8
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 9.3e-45 184.9 337 38.0
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 9.3e-45 184.9 285 40.7
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.2e-44 184.5 283 41.3
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 1.2e-44 184.5 283 41.3
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 1.2e-44 184.5 285 40.7
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.1e-44 183.7 397 35.0
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 2.1e-44 183.7 282 41.5
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.1e-44 183.7 285 40.0
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.1e-44 183.7 224 47.8
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 2.7e-44 183.3 302 40.4
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 3.5e-44 183.0 284 40.8
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-43 181.0 282 41.5
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.3e-43 181.0 282 41.5
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.3e-43 181.0 282 41.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 2.3e-43 180.3 294 41.2
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.9e-42 177.2 385 34.3
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.3e-42 176.4 313 38.0
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 4.3e-42 176.0 204 49.0
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 5.6e-42 175.6 169 53.3
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 1.6e-41 174.1 161 56.5
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.1e-41 173.7 293 39.2
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 3.6e-41 172.9 345 36.8
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.2e-41 172.2 336 36.3
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 6.2e-41 172.2 276 39.5
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 8.1e-41 171.8 211 45.5
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 5.3e-40 169.1 283 38.2
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 2.6e-39 166.8 157 54.1
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 2.6e-39 166.8 304 37.8
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.4e-39 166.0 292 40.1
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.8e-39 165.6 229 44.5
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 8.4e-38 161.8 246 41.5
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 4.2e-37 159.5 230 43.9
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 7.1e-37 158.7 302 36.1
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-36 157.9 297 37.4
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.5e-36 156.4 297 37.0
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-36 156.4 297 37.0
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 4.6e-36 156.0 308 37.0
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.0e-35 153.3 298 36.6
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 6.6e-35 152.1 311 34.1
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-32 144.8 278 36.7
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.1e-32 144.8 322 34.5
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 3.1e-32 143.3 299 36.5
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 4.5e-31 139.4 135 52.6
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 6.4e-30 135.6 169 43.8
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 5.5e-29 132.5 105 60.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 4.6e-28 129.4 132 48.5
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 1.1e-26 124.8 214 38.8
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-26 124.8 214 38.8
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.5e-26 124.4 212 41.0
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.3e-26 122.9 214 39.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 2.1e-25 120.6 270 32.6
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.8e-25 119.4 289 34.3
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.8e-24 117.5 297 34.3
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.5e-23 114.4 214 38.8
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.5e-21 105.9 255 32.9
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.0e-19 100.1 204 32.4
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.7e-17 93.2 95 47.4
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 1.1e-16 91.7 271 32.5
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.1e-16 91.7 173 39.3
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.4e-16 91.3 277 32.1
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 1.4e-16 91.3 161 34.2
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 4.1e-16 89.7 255 34.1
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 6.7e-11 72.4 161 31.1
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 3.7e-09 66.6 175 34.3
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 3.7e-09 66.6 201 36.3
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.5e-07 61.2 51 62.7
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 7.7e-07 58.9 95 47.4


User provided reference genes

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