Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.7e-86 322.8 185 100.0
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.3e-57 226.9 118 92.4
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 7.1e-56 221.1 118 89.8
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.2e-55 220.3 118 89.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.0e-54 217.2 118 89.0
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 4.8e-52 208.4 114 86.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.1e-51 207.2 118 83.1
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.1e-51 205.7 118 81.4
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 5.3e-51 204.9 118 83.1
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 5.3e-51 204.9 119 85.7
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.9e-51 204.5 116 82.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 6.9e-51 204.5 116 84.5
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.9e-51 204.5 118 80.5
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.5e-50 203.4 118 80.5
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 2.0e-50 203.0 130 77.7
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-50 202.6 116 82.8
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 2.6e-50 202.6 116 82.8
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.6e-50 202.6 118 80.5
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.4e-50 202.2 125 76.8
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 4.5e-50 201.8 118 80.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 5.9e-50 201.4 116 81.0
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.0e-49 200.7 118 80.5
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 1.3e-49 200.3 118 80.5
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-49 200.3 118 80.5
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.3e-49 200.3 118 78.8
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.2e-49 199.5 116 81.9
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 2.2e-49 199.5 114 83.3
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 6.5e-49 198.0 118 80.5
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 6.5e-49 198.0 118 80.5
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 6.5e-49 198.0 118 79.7
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 6.5e-49 198.0 116 81.0
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 8.5e-49 197.6 118 78.0
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 8.5e-49 197.6 118 79.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 8.5e-49 197.6 118 78.0
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.4e-48 196.8 118 79.7
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.4e-48 196.8 118 79.7
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 1.4e-48 196.8 116 77.6
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 1.4e-48 196.8 129 75.2
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 1.9e-48 196.4 115 80.0
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 2.5e-48 196.1 115 80.0
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.5e-48 196.1 116 81.0
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 2.5e-48 196.1 116 81.0
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 2.5e-48 196.1 116 81.0
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 2.5e-48 196.1 116 81.0
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 3.2e-48 195.7 117 79.5
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.2e-48 195.7 116 80.2
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.2e-48 195.3 118 78.8
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 5.5e-48 194.9 116 81.0
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 5.5e-48 194.9 114 81.6
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 5.5e-48 194.9 116 80.2
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 5.5e-48 194.9 116 79.3
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 9.3e-48 194.1 116 78.4
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.6e-47 193.4 116 79.3
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.1e-47 193.0 116 78.4
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 2.1e-47 193.0 116 78.4
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 2.1e-47 193.0 116 78.4
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 2.7e-47 192.6 117 79.5
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 2.7e-47 192.6 120 78.3
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 3.6e-47 192.2 116 80.2
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.6e-47 191.8 118 77.1
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 6.1e-47 191.4 118 78.8
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 6.1e-47 191.4 118 78.8
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 6.1e-47 191.4 114 79.8
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.0e-46 190.7 116 77.6
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 1.0e-46 190.7 117 78.6
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.8e-46 189.9 114 79.8
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 1.8e-46 189.9 114 77.2
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.0e-46 189.1 118 74.6
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 3.0e-46 189.1 116 76.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.9e-46 188.7 115 81.7
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 3.9e-46 188.7 118 78.8
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.1e-46 188.3 122 73.8
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.1e-46 188.3 127 73.2
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 5.1e-46 188.3 141 67.4
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 8.7e-46 187.6 116 75.0
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 8.7e-46 187.6 117 75.2
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.1e-45 187.2 132 69.7
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.1e-45 187.2 117 75.2
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.5e-45 186.8 119 74.8
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.5e-45 186.8 119 74.8
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.5e-45 186.8 119 74.8
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.9e-45 186.4 114 77.2
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.5e-45 186.0 119 73.9
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.5e-45 186.0 119 73.9
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 2.5e-45 186.0 119 73.9
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 2.5e-45 186.0 128 71.9
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.3e-45 185.7 119 73.9
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.3e-45 185.7 118 73.7
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 4.3e-45 185.3 116 73.3
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 4.3e-45 185.3 119 73.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 5.7e-45 184.9 115 80.0
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 5.7e-45 184.9 119 73.1
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 5.7e-45 184.9 119 73.1
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 7.4e-45 184.5 119 73.1
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 7.4e-45 184.5 119 73.1
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 7.4e-45 184.5 116 76.7
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 7.4e-45 184.5 119 73.9
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 7.4e-45 184.5 119 73.9
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 7.4e-45 184.5 119 73.9
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 9.7e-45 184.1 119 73.1
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 9.7e-45 184.1 118 72.9
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 9.7e-45 184.1 118 72.9
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-44 183.3 115 80.0
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.6e-44 183.3 124 70.2
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.2e-44 183.0 119 72.3
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.2e-44 183.0 119 72.3
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 2.2e-44 183.0 119 73.1
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 3.7e-44 182.2 119 73.1
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 2.4e-43 179.5 116 71.6
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 9.1e-43 177.6 120 71.7
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 1.5e-42 176.8 118 72.9
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.0e-41 174.1 166 56.0
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.0e-41 174.1 116 72.4
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.7e-41 173.3 116 75.9
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 5.0e-41 171.8 119 68.9
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-40 170.6 100 82.0
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-40 170.6 100 82.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 1.1e-40 170.6 114 73.7
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.2e-40 168.7 99 84.8
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 3.6e-39 165.6 118 66.9
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.6e-39 165.6 101 79.2
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.0e-38 164.1 135 61.5
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.9e-38 162.2 101 76.2
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 1.1e-37 160.6 96 78.1
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 1.5e-37 160.2 100 75.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.0e-37 159.8 99 75.8
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 5.7e-37 158.3 96 78.1
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-36 157.1 118 68.6
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 4.8e-36 155.2 113 61.9
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.8e-35 153.3 123 65.0
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 6.9e-35 151.4 110 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 4.5e-34 148.7 109 62.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.2e-33 146.4 93 77.4
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 9.4e-32 141.0 112 57.1
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 3.9e-30 135.6 101 66.3
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.0e-29 133.3 97 69.1
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 6.5e-25 118.2 64 85.9
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.3e-22 109.8 68 75.0
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.0e-22 109.4 64 81.2
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 5.2e-22 108.6 58 87.9
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 5.2e-22 108.6 63 81.0
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 8.8e-22 107.8 122 46.7
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-21 107.1 59 86.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 2.6e-21 106.3 64 81.2
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 4.4e-21 105.5 56 87.5
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 4.4e-21 105.5 61 83.6
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.3e-20 104.0 64 78.1
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.7e-20 103.6 63 76.2
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 7.0e-19 98.2 160 40.6
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.6e-18 97.1 55 81.8
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 5.9e-18 95.1 136 39.7
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 7.7e-18 94.7 53 81.1
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.0e-17 94.4 54 79.6
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.7e-17 93.6 132 40.2
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.8e-17 92.4 116 47.4
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 2.5e-16 89.7 53 77.4
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-15 87.4 53 71.7
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.6e-10 70.5 72 51.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 5.9e-10 68.6 52 65.4
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 1.9e-08 63.5 35 85.7


User provided reference genes

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