Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 7.1e-157 557.4 311 100.0
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 2.1e-92 343.2 303 64.4
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.5e-82 310.5 282 64.9
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.5e-82 308.1 282 64.5
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 3.5e-79 299.3 316 63.0
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.1e-72 277.7 269 61.3
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.5e-66 257.3 303 53.8
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 4.9e-65 252.3 308 51.3
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.9e-63 245.4 313 49.5
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 2.3e-62 243.4 313 49.2
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 2.5e-61 240.0 371 45.3
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 2.2e-57 226.9 306 48.4
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 1.2e-55 221.1 319 47.6
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-55 221.1 346 46.0
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 3.9e-54 216.1 220 55.9
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 1.3e-49 201.1 301 46.2
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 6.4e-49 198.7 315 45.1
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.2e-47 194.5 333 42.6
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 6.0e-47 192.2 248 51.2
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 1.5e-45 187.6 301 47.2
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 3.3e-45 186.4 302 46.7
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 7.3e-45 185.3 318 41.5
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 9.5e-45 184.9 264 48.1
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 2.1e-44 183.7 313 44.7
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 4.0e-43 179.5 305 44.9
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 4.0e-43 179.5 305 44.9
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 4.0e-43 179.5 290 44.8
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 5.8e-42 175.6 302 45.4
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 2.9e-41 173.3 248 46.8
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 4.9e-41 172.6 252 47.2
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 8.3e-41 171.8 254 46.1
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 1.4e-40 171.0 287 45.3
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 3.2e-40 169.9 266 45.9
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.6e-39 167.5 354 40.1
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.0e-38 164.9 279 41.9
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.7e-38 164.1 266 43.6
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.0e-38 163.3 314 41.1
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 3.9e-38 162.9 250 45.2
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 8.6e-38 161.8 243 45.7
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 1.1e-37 161.4 243 46.1
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.9e-37 160.6 298 41.6
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 4.3e-37 159.5 167 56.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.6e-36 157.5 197 52.3
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.8e-36 156.8 239 46.0
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 6.2e-36 155.6 308 38.3
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.1e-35 154.8 248 43.1
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 1.4e-35 154.5 268 42.9
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.4e-35 154.5 161 59.0
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.8e-35 154.1 161 58.4
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-35 154.1 161 58.4
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-35 154.1 161 58.4
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 2.4e-35 153.7 245 43.7
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.1e-35 153.3 252 46.4
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 4.0e-35 152.9 243 44.9
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 5.2e-35 152.5 262 42.0
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 5.2e-35 152.5 252 44.8
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.5e-34 151.0 267 40.8
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.5e-34 151.0 309 41.4
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.0e-34 150.6 243 45.3
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.0e-34 150.6 314 39.5
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.4e-34 149.8 226 46.5
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 2.9e-33 146.7 309 42.1
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.9e-33 146.7 275 41.8
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 3.8e-33 146.4 245 46.5
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 6.4e-33 145.6 148 60.1
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 6.4e-33 145.6 236 44.5
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.1e-32 144.8 274 41.6
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 3.2e-32 143.3 233 42.9
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 3.2e-32 143.3 170 54.7
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 7.1e-32 142.1 300 39.3
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.6e-31 141.0 234 43.6
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 1.6e-31 141.0 290 37.9
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 2.7e-31 140.2 244 43.9
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 4.6e-31 139.4 184 52.7
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 6.0e-31 139.0 304 40.1
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.0e-30 138.3 249 42.2
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.3e-30 137.9 259 40.5
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 3.0e-30 136.7 302 39.1
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 3.9e-30 136.3 245 42.0
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 5.1e-30 136.0 316 38.0
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 5.1e-30 136.0 302 40.4
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.1e-29 134.8 307 39.4
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 1.1e-29 134.8 268 40.3
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.5e-29 134.4 284 42.6
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 4.3e-29 132.9 264 40.2
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 5.6e-29 132.5 152 52.6
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 9.6e-29 131.7 153 52.3
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 9.6e-29 131.7 292 39.0
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 9.6e-29 131.7 234 40.6
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-28 131.3 235 42.6
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-28 131.0 322 37.3
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 2.1e-28 130.6 155 51.0
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 4.8e-28 129.4 270 38.9
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 4.8e-28 129.4 245 42.4
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 8.1e-28 128.6 281 38.8
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.1e-27 128.3 154 54.5
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.8e-27 127.5 301 36.9
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.8e-27 127.5 364 34.1
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 4.0e-27 126.3 225 40.9
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 9.0e-27 125.2 242 38.0
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 9.0e-27 125.2 142 54.2
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.5e-26 124.4 261 37.9
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 1.5e-26 124.4 138 50.7
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 1.7e-25 120.9 290 37.2
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 3.8e-25 119.8 321 36.8
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 3.8e-25 119.8 213 41.8
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 4.9e-25 119.4 153 51.0
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 6.4e-25 119.0 153 52.3
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.4e-24 117.1 157 46.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 7.1e-24 115.5 287 36.6
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 9.3e-24 115.2 320 37.2
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 9.3e-24 115.2 153 47.1
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.6e-23 114.4 297 38.7
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 4.3e-21 106.3 182 42.3
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 5.6e-21 105.9 257 39.3
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 4.8e-20 102.8 176 43.2
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.8e-19 100.9 95 54.7
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 1.8e-19 100.9 277 33.9
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.5e-18 96.3 332 31.6
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.9e-17 92.8 296 34.5
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.4e-16 91.3 296 34.1
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 3.5e-15 86.7 59 69.5
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 3.5e-15 86.7 266 32.7
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 4.6e-15 86.3 165 43.0
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 6.0e-15 85.9 213 35.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 1.8e-14 84.3 292 33.6
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 3.0e-14 83.6 294 31.0
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.9e-13 80.9 248 36.7
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 3.3e-13 80.1 198 34.8
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 4.3e-13 79.7 97 53.6
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 5.6e-13 79.3 149 41.6
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 1.4e-11 74.7 164 33.5
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.8e-11 74.3 108 46.3
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 4.0e-11 73.2 134 40.3
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.0e-09 68.6 77 49.4
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 1.3e-09 68.2 64 56.2
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 5.5e-08 62.8 92 44.6
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 3.5e-07 60.1 219 32.9
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 4.6e-07 59.7 82 48.8
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.3e-06 58.2 87 42.5


User provided reference genes

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