Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.3e-288 995.7 503 100.0
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.9e-236 822.4 537 80.4
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.6e-211 739.6 513 72.7
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.6e-211 739.6 513 72.7
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 9.5e-204 713.8 512 71.5
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.7e-200 703.0 514 70.0
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.2e-200 702.6 529 69.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 8.4e-200 700.7 510 71.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.9e-199 699.5 514 70.2
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 9.2e-199 697.2 517 69.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.2e-198 696.8 516 69.8
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.6e-198 696.4 518 69.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.7e-198 695.7 513 71.0
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 3.5e-198 695.3 512 70.7
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.5e-198 695.3 513 71.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 6.0e-198 694.5 509 69.7
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.3e-196 688.7 509 69.4
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.3e-196 688.3 524 68.5
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-195 686.8 515 68.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.2e-195 686.8 522 68.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-195 686.0 509 69.7
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.8e-195 685.6 510 70.6
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.8e-195 685.6 511 68.9
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.6e-195 685.3 512 69.1
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.2e-195 684.5 509 69.5
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.1e-195 684.1 515 69.7
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-194 683.7 506 70.2
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.8e-194 682.9 518 68.3
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.1e-194 682.2 516 68.8
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.0e-194 681.8 515 68.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 4.0e-194 681.8 515 68.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.0e-194 681.8 515 68.9
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.9e-194 681.0 519 67.4
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.9e-194 681.0 526 67.7
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 8.9e-194 680.6 513 68.2
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 8.9e-194 680.6 518 69.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 4.4e-193 678.3 516 67.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.3e-192 676.8 513 68.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.9e-192 675.6 517 67.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 3.8e-192 675.2 514 67.3
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.9e-192 674.9 521 67.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.4e-192 674.5 513 68.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 3.2e-191 672.2 515 67.6
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 3.2e-191 672.2 513 67.3
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 5.4e-191 671.4 515 68.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 5.4e-191 671.4 514 67.9
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 7.1e-191 671.0 516 67.6
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 7.1e-191 671.0 516 68.0
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 7.8e-190 667.5 523 67.5
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 7.8e-190 667.5 512 67.6
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-188 663.7 509 68.4
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.5e-188 663.3 509 67.8
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.5e-188 663.3 509 67.8
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.9e-188 662.9 514 66.9
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.5e-188 662.5 514 66.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.5e-188 662.5 510 67.3
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.3e-188 661.8 523 64.8
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 7.3e-188 661.0 512 67.6
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.3e-187 660.2 515 66.6
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.6e-187 659.8 515 66.6
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.1e-187 659.4 506 67.2
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.8e-187 659.1 492 66.5
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.6e-187 658.7 514 66.3
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 8.1e-187 657.5 507 66.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.8e-186 656.4 511 67.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 2.4e-186 656.0 509 66.2
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.1e-186 655.6 517 65.8
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.1e-186 655.6 515 65.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 9.0e-186 654.1 516 65.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 9.0e-186 654.1 521 65.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.0e-185 652.9 514 65.4
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.6e-185 652.5 517 65.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.5e-185 651.7 516 65.5
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 7.6e-185 651.0 517 65.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 7.6e-185 651.0 514 65.0
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 7.6e-185 651.0 514 65.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 7.6e-185 651.0 519 65.5
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.3e-184 650.2 515 67.2
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-184 650.2 517 65.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.3e-184 650.2 515 65.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.9e-184 649.0 514 65.0
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.9e-184 649.0 514 65.0
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.8e-184 648.7 484 69.8
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-184 647.5 525 64.8
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 8.4e-184 647.5 517 65.0
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.1e-183 647.1 548 64.4
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.2e-183 645.6 517 64.8
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.2e-183 645.6 515 65.6
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 7.1e-183 644.4 515 65.4
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 9.3e-183 644.0 514 64.6
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 9.3e-183 644.0 509 65.4
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-182 643.3 509 64.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.7e-182 642.5 511 64.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 6.0e-182 641.3 519 64.9
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 6.0e-182 641.3 517 65.2
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.3e-181 640.2 525 63.6
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.8e-181 639.8 514 64.6
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 5.1e-181 638.3 517 65.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 6.7e-181 637.9 549 62.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 8.7e-181 637.5 512 66.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 9.6e-180 634.0 517 63.8
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.8e-178 629.8 499 67.7
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.8e-178 629.8 491 68.2
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.0e-178 628.6 513 63.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.5e-175 618.2 507 64.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 6.0e-174 614.8 525 61.1
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.5e-172 610.1 513 61.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 9.6e-172 607.4 525 61.0
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.7e-171 605.5 529 60.5
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 2.9e-168 595.9 594 55.7
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.2e-167 592.4 606 53.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 4.2e-167 592.0 519 59.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.3e-165 587.0 542 58.7
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.9e-164 583.2 517 60.5
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.5e-164 582.8 526 56.5
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 8.2e-163 577.8 521 57.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.1e-162 577.4 515 59.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.4e-162 577.0 487 62.4
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 2.4e-162 576.2 521 61.2
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.1e-162 575.5 522 58.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.2e-159 565.8 511 58.3
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.1e-158 563.1 514 58.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-158 563.1 517 58.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.7e-153 544.7 425 68.0
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.8e-149 533.5 522 58.6
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.2e-142 510.8 485 55.9
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 3.0e-141 506.1 401 65.8
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 8.2e-139 498.0 534 50.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.2e-134 484.2 376 66.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 3.3e-132 476.1 519 49.9
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 7.0e-130 468.4 358 68.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 3.8e-128 462.6 421 58.4
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.5e-128 461.8 370 66.8
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.4e-127 458.0 417 60.7
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.2e-126 457.6 378 65.1
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.2e-125 452.2 536 49.4
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 5.4e-122 442.2 395 61.8
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.2e-115 420.2 386 60.9
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.5e-111 406.8 388 59.3
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.6e-110 402.9 324 66.4
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 5.6e-103 379.0 327 62.4
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-102 377.5 493 44.2
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-100 370.2 280 68.2
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-98 363.6 296 66.2
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 9.2e-98 361.7 275 69.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-76 291.6 214 70.6
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-74 285.0 172 77.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.1e-73 280.8 490 36.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 7.8e-73 278.9 276 58.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.4e-66 258.1 250 59.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.4e-61 240.7 204 65.7
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 4.0e-53 213.4 271 48.0
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 9.0e-53 212.2 132 75.0
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.5e-52 209.9 197 55.8
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.9e-50 204.5 131 71.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 7.9e-49 199.1 130 74.6
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.5e-47 194.1 148 67.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.8e-45 188.0 114 80.7
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.3e-45 186.4 160 62.5
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 5.5e-42 176.4 277 41.5
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.9e-41 172.6 114 77.2
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.4e-37 161.8 91 81.3
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.4e-37 161.8 91 81.3
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 3.1e-37 160.6 111 68.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 5.9e-36 156.4 261 43.7
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.8e-29 134.8 153 48.4
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 2.4e-21 107.8 61 77.0
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 9.1e-21 105.9 64 71.9
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.6e-20 105.1 64 73.4
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.5e-20 103.6 65 80.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.9e-19 100.9 97 57.7
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-19 100.9 126 50.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.8e-19 100.5 65 76.9
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.1e-18 99.0 66 66.7
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-18 99.0 65 75.4
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 5.5e-18 96.7 96 53.1
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.3e-16 91.3 77 64.9
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.0e-16 90.5 94 58.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.5e-15 88.6 226 32.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.5e-11 72.8 46 67.4
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 9.8e-07 59.3 48 72.9


User provided reference genes

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