Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28709 Striga asiatica HOM05D003446 ORTHO05D003915 1.9e-53 212.2 106 100.0
SGA_v2.0_scaffold77G25285 Striga asiatica HOM05D003446 ORTHO05D003915 2.4e-24 115.5 75 76.0
MSTRG.17869 Avicennia marina HOM05D003446 ORTHO05D003915 7.5e-18 94.0 84 57.1
SalBow2G2679 Salvia bowleyana HOM05D003446 ORTHO05D003915 8.3e-17 90.5 75 61.3
unitig_749.g13766 Utricularia gibba HOM05D003446 ORTHO05D003915 1.0e-14 83.6 67 64.2
unitig_26.g10204 Utricularia gibba HOM05D003446 ORTHO05D003915 1.3e-14 83.2 76 57.9
HanXRQChr05g0135531 Helianthus annuus HOM05D003446 ORTHO05D003915 3.0e-14 82.0 73 56.2
Lj1A143T43 Lonicera japonica HOM05D003446 ORTHO05D003915 3.9e-14 81.6 73 56.2
TWI79G0878 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 3.9e-14 81.6 71 57.7
Rhsim13G0074100 Rhododendron simsii HOM05D003446 ORTHO05D003915 1.1e-13 80.1 69 56.5
Eucgr.J01950 Eucalyptus grandis HOM05D003446 ORTHO05D003915 1.5e-13 79.7 80 55.0
AUR62001704 Chenopodium quinoa HOM05D003446 ORTHO05D003915 1.9e-13 79.3 76 52.6
Peaxi162Scf00842g00015 Petunia axillaris HOM05D003446 ORTHO05D003915 2.5e-13 79.0 69 59.4
Nitab4.5_0000880g0040 Nicotiana tabacum HOM05D003446 ORTHO05D003915 3.3e-13 78.6 71 54.9
ECA236G4759 Erigeron canadensis HOM05D003446 ORTHO05D003915 5.6e-13 77.8 74 52.7
Cc01_g13730 Coffea canephora HOM05D003446 ORTHO05D003915 7.3e-13 77.4 72 54.2
Migut.N00812 Erythranthe guttata HOM05D003446 ORTHO05D003915 7.3e-13 77.4 77 55.8
CDE04G1890 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 1.2e-12 76.6 80 50.0
CANSAT54G0299 Cannabis sativa HOM05D003446 ORTHO05D003915 3.6e-12 75.1 83 51.8
CAN.G538.3 Capsicum annuum HOM05D003446 ORTHO05D003915 3.6e-12 75.1 74 51.4
Nitab4.5_0002405g0050 Nicotiana tabacum HOM05D003446 ORTHO05D003915 4.7e-12 74.7 72 54.2
TAR402G0007 Trochodendron aralioides HOM05D003446 ORTHO05D003915 6.2e-12 74.3 79 50.6
AUR62020077 Chenopodium quinoa HOM05D003446 ORTHO05D003915 8.1e-12 73.9 70 50.0
COL.COLO4_19086 Corchorus olitorius HOM05D003446 ORTHO05D003915 8.1e-12 73.9 69 56.5
Phvul.006G063800 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 8.1e-12 73.9 70 54.3
Gorai.003G125200 Gossypium raimondii HOM05D003446 ORTHO05D003915 1.4e-11 73.2 73 50.7
Oeu035016.1 Olea europaea HOM05D003446 ORTHO05D003915 1.4e-11 73.2 72 52.8
CSS0014722 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.8e-11 72.8 65 55.4
CDE03G0004 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 1.8e-11 72.8 80 46.2
Sopen06g001980 Solanum pennellii HOM05D003446 ORTHO05D003915 1.8e-11 72.8 74 52.7
vmacro03001 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 1.8e-11 72.8 72 48.6
VMungo0540G2401 Vigna mungo HOM05D003446 ORTHO05D003915 1.8e-11 72.8 71 53.5
Cfa011633 Carpinus fangiana HOM05D003446 ORTHO05D003915 2.3e-11 72.4 72 55.6
Gohir.D03G118800 Gossypium hirsutum HOM05D003446 ORTHO05D003915 2.3e-11 72.4 71 50.7
PGR119G0877 Punica granatum HOM05D003446 ORTHO05D003915 2.3e-11 72.4 67 59.7
CiPaw.13G082900 Carya illinoinensis HOM05D003446 ORTHO05D003915 3.1e-11 72.0 76 53.9
Glyma.18G067500 Glycine max HOM05D003446 ORTHO05D003915 3.1e-11 72.0 73 50.7
Dinv14473 Davidia involucrata HOM05D003446 ORTHO05D003915 4.0e-11 71.6 74 52.7
Solyc06g006000.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 4.0e-11 71.6 74 51.4
arahy.Tifrunner.gnm1.ann1.TI8HRK Arachis hypogaea HOM05D003446 ORTHO05D003915 5.2e-11 71.2 69 56.5
Gohir.A03G048300 Gossypium hirsutum HOM05D003446 ORTHO05D003915 5.2e-11 71.2 71 50.7
Peaxi162Scf00216g01419 Petunia axillaris HOM05D003446 ORTHO05D003915 5.2e-11 71.2 69 55.1
PGSC0003DMG400020844 Solanum tuberosum HOM05D003446 ORTHO05D003915 6.8e-11 70.9 74 51.4
FAN16G2611 Fragaria x ananassa HOM05D003446 ORTHO05D003915 8.9e-11 70.5 71 50.7
FAN25G0028 Fragaria x ananassa HOM05D003446 ORTHO05D003915 8.9e-11 70.5 71 50.7
RcHm_v2.0_Chr5g0068081 Rosa chinensis HOM05D003446 ORTHO05D003915 8.9e-11 70.5 73 50.7
arahy.Tifrunner.gnm1.ann1.6X3X3D Arachis hypogaea HOM05D003446 ORTHO05D003915 1.2e-10 70.1 69 55.1
Sabra09G0028900 Salix brachista HOM05D003446 ORTHO05D003915 1.2e-10 70.1 78 50.0
Duzib168G0523 Durio zibethinus HOM05D003446 ORTHO05D003915 1.5e-10 69.7 71 53.5
FvH4_3g37870 Fragaria vesca HOM05D003446 ORTHO05D003915 1.5e-10 69.7 71 50.7
FAN11G3995 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.5e-10 69.7 71 50.7
MD03G1078000 Malus domestica HOM05D003446 ORTHO05D003915 1.5e-10 69.7 71 50.7
Actinidia25129 Actinidia chinensis HOM05D003446 ORTHO05D003915 2.0e-10 69.3 73 49.3
DCAR_018941 Daucus carota HOM05D003446 ORTHO05D003915 2.0e-10 69.3 73 50.7
Nn2g11351 Nelumbo nucifera HOM05D003446 ORTHO05D003915 2.0e-10 69.3 72 54.2
EL10Ac7g16108 Beta vulgaris HOM05D003446 ORTHO05D003915 3.4e-10 68.6 69 52.2
FAN21G1385 Fragaria x ananassa HOM05D003446 ORTHO05D003915 3.4e-10 68.6 71 49.3
ClCG03G000970 Citrullus lanatus HOM05D003446 ORTHO05D003915 4.4e-10 68.2 68 50.0
Thecc.09G307400 Theobroma cacao HOM05D003446 ORTHO05D003915 4.4e-10 68.2 74 52.7
CsaV3_1G035970 Cucumis sativus L. HOM05D003446 ORTHO05D003915 9.9e-10 67.0 78 44.9
Psat5g162520 Pisum sativum HOM05D003446 ORTHO05D003915 9.9e-10 67.0 72 54.2
MD11G1082600 Malus domestica HOM05D003446 ORTHO05D003915 1.3e-09 66.6 71 49.3
Prupe.6G063000 Prunus persica HOM05D003446 ORTHO05D003915 1.3e-09 66.6 74 50.0
QL93p2004_0016 Quercus lobata HOM05D003446 ORTHO05D003915 1.3e-09 66.6 83 48.2
CiPaw.13G083100 Carya illinoinensis HOM05D003446 ORTHO05D003915 1.7e-09 66.2 77 50.6
MELO3C020570.2 Cucumis melo HOM05D003446 ORTHO05D003915 1.7e-09 66.2 78 43.6
QL01p027392 Quercus lobata HOM05D003446 ORTHO05D003915 1.7e-09 66.2 83 48.2
Hund18865 Selenicereus undatus HOM05D003446 ORTHO05D003915 2.2e-09 65.9 71 50.7
Atru.chr3.4056 Acer truncatum HOM05D003446 ORTHO05D003915 2.9e-09 65.5 98 42.9
TPR.G30108 Trifolium pratense HOM05D003446 ORTHO05D003915 3.8e-09 65.1 71 50.7
Actinidia38843 Actinidia chinensis HOM05D003446 ORTHO05D003915 4.9e-09 64.7 77 45.5
Lalb_Chr15g0082611 Lupinus albus HOM05D003446 ORTHO05D003915 4.9e-09 64.7 71 47.9
Sed0017405 Sechium edule HOM05D003446 ORTHO05D003915 4.9e-09 64.7 68 47.1
Cpa.g.sc112.75 Carica papaya HOM05D003446 ORTHO05D003915 6.4e-09 64.3 73 45.2
Medtr3g462220 Medicago truncatula HOM05D003446 ORTHO05D003915 6.4e-09 64.3 68 51.5
Ca_14891_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 1.1e-08 63.5 68 51.5
MBI01_g34893_MAGBIO Magnolia biondii HOM05D003446 ORTHO05D003915 1.1e-08 63.5 76 47.4
HPP92_015338 Vanilla planifolia HOM05D003446 ORTHO05D003915 1.4e-08 63.2 73 49.3
ATR0618G355 Amborella trichopoda HOM05D003446 ORTHO05D003915 1.9e-08 62.8 84 42.9
Lj6g0014075 Lotus japonicus HOM05D003446 ORTHO05D003915 1.9e-08 62.8 70 52.9
Potri.009G041100 Populus trichocarpa HOM05D003446 ORTHO05D003915 2.4e-08 62.4 75 44.0
GSVIVG01024811001 Vitis vinifera HOM05D003446 ORTHO05D003915 2.4e-08 62.4 72 48.6
Aqoxy1G00728 Aquilegia oxysepala HOM05D003446 ORTHO05D003915 4.1e-08 61.6 75 46.7
Lsat_1_v5_gn_8_72121 Lactuca sativa HOM05D003446 ORTHO05D003915 4.1e-08 61.6 59 52.5
Haze_24238 Corylus avellana HOM05D003446 ORTHO05D003915 7.1e-08 60.8 52 55.8
Ciclev10029307m.g Citrus clementina HOM05D003446 ORTHO05D003915 9.2e-08 60.5 73 42.5
Manes.02G122700 Manihot esculenta HOM05D003446 ORTHO05D003915 3.5e-07 58.5 78 39.7
Sc06g0007160 Simmondsia chinensis HOM05D003446 ORTHO05D003915 1.0e-06 57.0 69 44.9
Os03g0265900 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 3.9e-06 55.1 64 48.4
Glyma.08G334500 Glycine max HOM05D003446 ORTHO05D003915 5.1e-06 54.7 39 64.1


User provided reference genes

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