Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 1.9e-107 392.5 194 100.0
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 1.7e-87 326.2 186 86.6
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 6.5e-84 314.3 184 82.1
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.7e-82 308.9 186 81.7
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 2.0e-77 292.7 194 71.6
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 3.2e-75 285.4 186 74.2
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 9.4e-75 283.9 191 74.9
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.2e-74 283.5 179 76.5
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 3.0e-73 278.9 179 72.1
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.6e-72 275.8 176 73.9
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.6e-72 275.8 188 70.7
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 3.3e-72 275.4 188 70.2
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 9.7e-72 273.9 188 70.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.3e-71 273.5 194 70.6
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.7e-71 273.1 173 74.6
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 8.2e-71 270.8 176 74.4
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.4e-70 270.0 188 68.6
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.4e-70 270.0 179 71.5
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.8e-70 269.6 176 73.9
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 1.8e-70 269.6 194 69.6
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 3.1e-70 268.9 176 73.3
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 5.3e-70 268.1 194 69.6
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 5.3e-70 268.1 194 66.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 9.1e-70 267.3 194 69.6
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.6e-69 266.5 178 73.6
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.0e-69 266.2 178 73.6
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 2.0e-69 266.2 181 74.0
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.5e-69 265.4 179 72.6
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.7e-69 264.2 174 74.7
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.0e-68 263.8 194 66.0
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 3.8e-68 261.9 181 71.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 5.0e-68 261.5 172 69.2
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 5.0e-68 261.5 194 65.5
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 5.0e-68 261.5 188 64.9
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 6.5e-68 261.2 184 67.4
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 6.5e-68 261.2 184 67.4
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 6.5e-68 261.2 183 71.0
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 6.5e-68 261.2 188 64.4
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 6.5e-68 261.2 176 72.7
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 8.5e-68 260.8 183 71.0
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 8.5e-68 260.8 188 64.4
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 8.5e-68 260.8 179 70.9
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 1.1e-67 260.4 176 73.3
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.1e-67 260.4 194 66.5
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.1e-67 260.4 196 67.3
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 1.1e-67 260.4 196 67.9
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 1.5e-67 260.0 165 75.2
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.9e-67 259.6 181 71.3
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.5e-67 259.2 176 72.7
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 2.5e-67 259.2 179 69.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 4.2e-67 258.5 176 73.3
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 4.2e-67 258.5 177 66.1
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 5.5e-67 258.1 176 72.7
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 5.5e-67 258.1 191 61.8
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 7.2e-67 257.7 194 63.9
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 7.2e-67 257.7 181 70.2
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 7.2e-67 257.7 191 67.5
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 9.4e-67 257.3 176 73.3
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 9.4e-67 257.3 176 73.3
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 9.4e-67 257.3 189 66.7
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.2e-66 256.9 179 68.7
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.6e-66 256.5 178 72.5
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.6e-66 256.5 181 70.7
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.1e-66 256.1 179 71.5
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.1e-66 256.1 189 66.1
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 3.6e-66 255.4 176 71.6
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 6.1e-66 254.6 166 73.5
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 6.1e-66 254.6 177 65.0
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 6.1e-66 254.6 169 72.2
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.0e-65 253.8 182 69.2
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-65 253.8 176 71.0
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.0e-65 253.8 179 71.5
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.0e-65 253.8 178 70.2
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.8e-65 253.1 194 60.3
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 3.0e-65 252.3 176 71.6
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 4.0e-65 251.9 200 63.5
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.0e-65 251.9 192 66.7
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 5.2e-65 251.5 166 73.5
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.2e-64 250.4 176 68.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.5e-64 250.0 179 70.4
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.5e-64 250.0 179 68.7
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 2.0e-64 249.6 189 64.0
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.0e-64 249.6 173 70.5
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.6e-64 249.2 194 62.9
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 7.5e-64 247.7 166 72.3
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 9.8e-64 247.3 177 66.7
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 9.8e-64 247.3 174 68.4
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.3e-63 246.9 166 72.9
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.2e-63 246.1 178 67.4
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 3.7e-63 245.4 177 67.8
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 4.8e-63 245.0 158 73.4
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 4.8e-63 245.0 173 68.2
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 4.8e-63 245.0 172 69.2
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 6.3e-63 244.6 169 70.4
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 8.3e-63 244.2 177 70.1
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 2.4e-62 242.7 177 67.2
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.1e-62 241.9 175 66.9
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 9.1e-62 240.7 160 69.4
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 8.5e-60 234.2 169 66.9
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 7.2e-59 231.1 181 61.3
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 4.7e-58 228.4 193 59.1
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 1.4e-57 226.9 184 64.7
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.4e-57 226.9 165 64.8
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.3e-57 226.1 170 63.5
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 5.2e-57 224.9 167 64.1
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 5.2e-57 224.9 165 70.3
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.0e-56 223.0 192 57.3
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.0e-56 223.0 192 57.3
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.4e-56 222.2 165 61.8
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 1.7e-55 219.9 176 65.3
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.2e-55 219.5 173 59.5
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.1e-54 217.2 168 60.1
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 4.1e-54 215.3 173 57.2
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 5.4e-54 214.9 169 61.5
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-53 213.8 176 64.8
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.7e-53 212.6 150 69.3
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 4.3e-51 205.3 178 57.9
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.0e-49 200.7 127 78.0
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.0e-49 198.7 174 55.7
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 6.8e-49 198.0 134 69.4
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.0e-48 196.4 183 53.6
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 7.5e-48 194.5 167 56.3
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 4.9e-47 191.8 168 52.4
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.8e-46 189.9 164 53.7
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.2e-45 187.2 174 54.6
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.0e-45 186.4 130 66.2
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 5.9e-45 184.9 176 54.5
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.7e-44 183.3 159 52.2
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.3e-44 183.0 124 72.6
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.6e-42 176.8 113 77.0
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.8e-41 171.4 149 51.0
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 1.2e-40 170.6 158 58.2
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.0e-40 169.9 157 58.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 7.5e-40 167.9 124 66.9
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 4.9e-39 165.2 172 44.8
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 2.0e-37 159.8 97 77.3
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 6.0e-37 158.3 103 77.7
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 5.0e-36 155.2 168 44.6
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 3.3e-35 152.5 158 53.8
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 2.8e-34 149.4 133 57.9
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.8e-33 144.8 118 59.3
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 3.4e-32 142.5 168 40.5
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 5.8e-32 141.7 111 61.3
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 4.6e-29 132.1 169 42.0
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.9e-27 126.7 172 37.2
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.5e-24 117.1 82 69.5
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 4.4e-24 115.5 111 50.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 2.2e-23 113.2 111 49.5
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.2e-22 109.4 59 79.7
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 7.3e-19 98.2 80 53.8
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.1e-18 96.7 89 62.9
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.4e-17 94.0 55 76.4
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.9e-14 83.6 86 47.7
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 9.3e-14 81.3 65 63.1
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.8e-09 67.0 40 72.5
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 1.7e-07 60.5 95 38.9


User provided reference genes

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