Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 7.7e-132 473.8 232 100.0
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 1.6e-36 157.1 301 38.9
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 5.3e-32 142.1 289 39.1
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 9.0e-32 141.4 279 40.5
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 1.5e-31 140.6 266 39.8
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 2.0e-31 140.2 287 38.0
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 7.6e-31 138.3 243 42.4
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.3e-27 127.5 287 34.5
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 1.3e-27 127.5 230 37.8
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 3.3e-26 122.9 302 35.1
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 1.6e-25 120.6 289 33.2
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 2.2e-25 120.2 297 36.7
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 3.7e-25 119.4 311 33.4
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.8e-25 119.0 301 32.9
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 6.3e-25 118.6 291 34.7
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 6.3e-25 118.6 259 35.5
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 8.2e-25 118.2 267 34.5
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 6.9e-24 115.2 260 34.2
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 9.0e-24 114.8 281 33.1
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 9.0e-24 114.8 298 32.6
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 1.2e-23 114.4 292 34.2
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.2e-23 114.4 261 34.9
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 3.4e-23 112.8 306 34.3
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.4e-23 112.8 299 33.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 4.5e-23 112.5 247 35.2
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 7.6e-23 111.7 269 34.6
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 1.3e-22 110.9 274 35.4
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.7e-22 110.5 274 35.4
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.7e-22 110.5 291 33.3
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 2.9e-22 109.8 268 35.8
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 5.0e-22 109.0 290 33.1
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.1e-21 107.8 281 35.2
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.1e-21 107.8 319 32.0
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 1.1e-21 107.8 282 33.0
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.4e-21 107.5 299 32.4
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 1.4e-21 107.5 304 33.2
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.9e-21 107.1 281 34.9
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 2.5e-21 106.7 309 32.7
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 2.5e-21 106.7 292 31.8
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 3.2e-21 106.3 284 33.5
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 3.2e-21 106.3 297 32.3
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 4.2e-21 105.9 265 33.2
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 5.5e-21 105.5 314 29.9
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 7.2e-21 105.1 281 30.6
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 9.4e-21 104.8 320 30.9
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.4e-21 104.8 320 30.9
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 9.4e-21 104.8 320 30.9
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 9.4e-21 104.8 314 31.2
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.6e-20 104.0 315 31.1
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 1.6e-20 104.0 279 33.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.6e-20 104.0 263 38.0
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 2.1e-20 103.6 281 31.0
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 2.1e-20 103.6 320 29.1
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 2.7e-20 103.2 314 30.3
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 2.7e-20 103.2 267 31.8
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 2.7e-20 103.2 295 31.5
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.7e-20 103.2 310 31.6
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 3.6e-20 102.8 236 34.3
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 3.6e-20 102.8 324 30.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 4.6e-20 102.4 318 30.5
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 6.1e-20 102.1 303 33.0
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.3e-19 100.1 304 31.6
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 8.8e-19 98.2 320 29.7
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 1.1e-18 97.8 331 29.0
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.1e-18 97.8 261 34.5
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.1e-18 97.8 274 33.9
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.5e-18 97.4 301 31.9
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.9e-18 97.1 305 30.5
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 1.9e-18 97.1 316 29.7
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.9e-18 97.1 310 30.6
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 3.3e-18 96.3 259 33.6
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 5.7e-18 95.5 279 30.1
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 9.7e-18 94.7 318 30.2
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 9.7e-18 94.7 270 30.4
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 2.2e-17 93.6 220 36.8
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 3.7e-17 92.8 272 30.5
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 6.3e-17 92.0 312 28.8
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 6.3e-17 92.0 163 39.3
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 6.3e-17 92.0 288 31.9
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 3.1e-16 89.7 273 28.6
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 4.1e-16 89.4 309 28.2
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 4.1e-16 89.4 296 29.4
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.3e-16 89.0 221 34.4
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 6.9e-16 88.6 285 30.5
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-16 88.2 204 34.3
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 9.1e-16 88.2 204 34.3
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 9.1e-16 88.2 296 29.7
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 2.6e-15 86.7 258 31.8
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-15 86.3 204 33.8
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 3.4e-15 86.3 204 33.8
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 4.5e-15 85.9 337 28.5
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 5.9e-15 85.5 204 33.3
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 5.9e-15 85.5 289 31.8
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 7.7e-15 85.1 252 31.3
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 7.7e-15 85.1 203 33.0
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 7.7e-15 85.1 203 33.0
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.3e-14 84.3 275 32.7
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 3.8e-14 82.8 214 35.0
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 5.0e-14 82.4 265 29.4
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 1.4e-13 80.9 285 31.2
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 1.9e-13 80.5 268 29.1
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 2.5e-13 80.1 230 30.9
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 2.5e-13 80.1 226 29.2
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 4.2e-13 79.3 289 32.2
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 9.4e-13 78.2 220 31.4
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.2e-12 77.8 224 33.9
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.1e-12 77.0 291 30.9
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 2.1e-12 77.0 275 30.2
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.1e-12 77.0 277 30.0
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 3.6e-12 76.3 243 32.1
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 4.7e-12 75.9 282 31.9
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 6.1e-12 75.5 273 31.5
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.0e-11 74.7 212 34.4
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 1.4e-11 74.3 168 34.5
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.8e-11 73.9 300 30.0
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 3.0e-11 73.2 267 31.5
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 3.0e-11 73.2 278 29.1
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 3.0e-11 73.2 278 29.1
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 3.9e-11 72.8 294 29.3
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 3.9e-11 72.8 69 53.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 3.9e-11 72.8 83 47.0
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 5.1e-11 72.4 278 29.1
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 5.1e-11 72.4 69 53.6
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 6.7e-11 72.0 96 46.9
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 8.8e-11 71.6 303 29.4
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 8.8e-11 71.6 83 48.2
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.1e-10 71.2 69 50.7
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.0e-10 70.5 87 44.8
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.6e-10 70.1 295 30.2
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 2.6e-10 70.1 295 30.2
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 3.3e-10 69.7 99 43.4
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 5.7e-10 68.9 292 28.8
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 5.7e-10 68.9 258 27.9
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 7.4e-10 68.6 109 39.4
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 1.7e-09 67.4 68 51.5
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 2.2e-09 67.0 68 52.9
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 2.8e-09 66.6 76 46.1
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 6.3e-09 65.5 275 28.7
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 8.2e-09 65.1 292 28.1
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.8e-08 63.9 273 29.3
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.4e-08 63.5 280 28.9
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 2.4e-08 63.5 295 25.8
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 5.3e-08 62.4 283 26.9
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 9.1e-08 61.6 75 48.0
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 5.9e-07 58.9 106 38.7
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 1.3e-06 57.8 98 41.8
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.3e-06 57.8 166 31.9
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 8.5e-06 55.1 95 37.9
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 8.5e-06 55.1 76 43.4
PGSC0003DMG400028163 Solanum tuberosum HOM05D003139 ORTHO05D003540 8.5e-06 55.1 144 32.6


User provided reference genes

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