Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 2.5e-127 458.8 226 100.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 1.7e-112 409.5 223 86.1
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 3.4e-108 395.2 223 86.1
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 2.5e-103 379.0 221 83.3
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 5.8e-100 367.9 223 82.5
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 9.8e-100 367.1 219 81.7
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 9.8e-100 367.1 221 78.7
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 8.3e-99 364.0 223 77.6
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 9.2e-98 360.5 219 80.4
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.7e-96 356.3 219 79.9
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 1.9e-95 352.8 219 78.5
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.5e-95 352.4 222 77.5
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.7e-91 339.7 215 77.7
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 8.3e-91 337.4 212 77.8
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.4e-90 335.9 220 77.3
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 2.4e-90 335.9 220 77.3
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 9.2e-90 334.0 209 77.0
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 1.2e-89 333.6 205 77.6
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.6e-89 333.2 219 73.1
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 2.7e-89 332.4 219 74.4
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 4.6e-89 331.6 219 74.4
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 1.0e-88 330.5 219 72.1
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.3e-88 330.1 215 75.3
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 1.3e-88 330.1 214 76.2
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.3e-88 329.3 219 73.5
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 5.1e-88 328.2 215 74.9
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 5.1e-88 328.2 218 74.3
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 1.5e-87 326.6 211 74.4
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.9e-87 326.2 215 73.0
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 5.6e-87 324.7 221 73.8
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 5.6e-87 324.7 219 72.6
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 7.3e-87 324.3 221 73.8
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 7.3e-87 324.3 214 75.2
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 7.3e-87 324.3 219 71.7
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-86 323.2 217 74.2
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.6e-86 323.2 218 74.3
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 2.1e-86 322.8 214 75.2
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 6.2e-86 321.2 217 73.7
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.1e-86 320.9 214 74.8
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.1e-85 320.5 214 74.3
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 6.8e-85 317.8 212 73.1
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 8.9e-85 317.4 215 73.5
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 2.0e-84 316.2 215 71.6
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 2.0e-84 316.2 219 70.3
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 3.4e-84 315.5 212 72.6
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 4.4e-84 315.1 212 71.7
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 7.6e-84 314.3 220 70.0
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 7.6e-84 314.3 219 68.9
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 7.6e-84 314.3 217 72.8
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 9.9e-84 313.9 212 72.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 9.9e-84 313.9 212 72.2
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.3e-83 313.5 213 73.7
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 2.2e-83 312.8 218 70.6
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 8.4e-83 310.8 217 70.5
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 1.4e-82 310.1 210 72.9
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.4e-82 310.1 215 71.6
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.9e-82 309.7 220 70.0
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 5.4e-82 308.1 220 69.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 1.6e-81 306.6 212 70.8
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 1.6e-81 306.6 220 67.7
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 1.6e-81 306.6 220 67.7
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 1.6e-81 306.6 220 70.5
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 2.7e-81 305.8 217 71.9
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 2.7e-81 305.8 217 71.9
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 2.7e-81 305.8 217 71.9
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 2.7e-81 305.8 217 71.9
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 2.7e-81 305.8 217 71.9
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 4.6e-81 305.1 212 69.8
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.3e-80 303.5 211 69.2
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.3e-80 303.5 219 70.3
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.7e-80 303.1 218 67.9
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 1.7e-80 303.1 215 68.8
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 6.6e-80 301.2 215 68.8
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 5.6e-79 298.1 221 70.1
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 7.3e-79 297.7 218 67.0
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 7.3e-79 297.7 171 84.8
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 9.6e-79 297.4 216 68.5
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.3e-78 297.0 185 75.7
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.8e-78 295.8 218 66.5
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 2.8e-78 295.8 222 66.7
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 8.1e-78 294.3 216 68.5
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 3.1e-77 292.4 224 64.3
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 6.9e-77 291.2 211 68.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 9.0e-77 290.8 212 67.5
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 9.9e-76 287.3 212 67.5
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 2.9e-75 285.8 213 68.5
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 1.9e-74 283.1 218 66.1
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.9e-74 283.1 215 66.0
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 2.4e-74 282.7 217 65.9
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.2e-73 280.4 220 66.4
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 3.5e-73 278.9 218 65.1
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.0e-72 277.3 217 64.5
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 3.9e-72 275.4 217 64.1
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 5.1e-72 275.0 212 65.1
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 5.1e-72 275.0 218 64.2
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.1e-71 273.9 215 63.7
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.5e-71 273.5 221 62.9
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 2.5e-71 272.7 219 62.1
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.3e-71 271.9 219 63.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 5.6e-71 271.6 215 65.1
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 5.6e-71 271.6 215 64.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.1e-70 269.6 219 62.6
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.1e-70 269.6 219 62.1
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.1e-70 269.6 219 62.1
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.8e-70 269.2 233 64.8
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 1.4e-69 266.9 215 64.7
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 5.3e-69 265.0 227 63.0
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.3e-69 265.0 219 62.1
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 1.2e-68 263.8 220 61.8
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 1.5e-68 263.5 215 59.5
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 3.4e-68 262.3 211 61.6
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 5.8e-68 261.5 216 62.5
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.3e-67 260.4 212 62.3
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.3e-67 260.4 212 62.3
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 9.3e-66 254.2 222 59.5
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 4.6e-65 251.9 212 56.1
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 2.3e-64 249.6 164 75.0
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 2.5e-63 246.1 216 58.3
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 9.6e-63 244.2 212 54.7
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.7e-62 242.3 212 57.5
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 6.2e-62 241.5 170 71.8
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.8e-61 240.0 224 57.6
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 8.4e-59 231.1 171 67.3
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 2.1e-57 226.5 216 57.4
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 3.0e-56 222.6 216 56.0
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 2.4e-53 213.0 168 63.1
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.3e-53 211.8 160 68.1
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 6.9e-53 211.5 166 65.1
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.6e-49 200.3 210 53.8
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 3.7e-46 189.1 222 49.5
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 8.2e-46 188.0 128 68.8
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 3.1e-45 186.0 139 70.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 5.9e-44 181.8 134 67.9
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 2.4e-37 159.8 211 47.4
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 5.3e-37 158.7 99 77.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 9.1e-37 157.9 135 61.5
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 3.4e-36 156.0 95 76.8
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.9e-28 128.6 97 64.9
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.5e-18 97.4 208 36.5
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 2.0e-07 60.5 161 31.1
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 6.3e-06 55.5 154 29.9


User provided reference genes

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