Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 2.2e-134 482.3 239 100.0
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 2.6e-74 282.7 231 66.2
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 2.9e-73 279.3 225 64.9
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.7e-70 270.0 160 83.1
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 8.6e-70 267.7 183 73.2
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.3e-69 265.8 183 72.1
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 2.8e-68 262.7 184 72.3
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 6.2e-68 261.5 160 78.1
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 8.0e-68 261.2 197 68.5
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 1.8e-67 260.0 160 78.1
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 4.0e-67 258.8 146 84.9
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 8.9e-67 257.7 151 82.8
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.2e-66 257.3 153 82.4
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 7.5e-66 254.6 153 80.4
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 1.3e-65 253.8 226 59.7
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 2.2e-65 253.1 184 69.6
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 2.9e-65 252.7 206 64.1
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 2.9e-65 252.7 165 75.8
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 4.9e-65 251.9 157 79.0
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 3.2e-64 249.2 162 74.1
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 3.2e-64 249.2 225 61.3
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 4.1e-64 248.8 166 73.5
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 4.1e-64 248.8 166 74.1
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 4.1e-64 248.8 159 74.2
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 4.1e-64 248.8 161 75.2
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 5.4e-64 248.4 161 73.9
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 5.4e-64 248.4 157 76.4
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 7.0e-64 248.1 160 75.0
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.2e-63 247.3 173 71.1
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 1.6e-63 246.9 158 74.7
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 2.0e-63 246.5 172 69.8
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 2.7e-63 246.1 225 60.9
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 2.7e-63 246.1 160 74.4
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 4.6e-63 245.4 167 74.9
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 6.0e-63 245.0 203 64.5
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 7.8e-63 244.6 192 67.2
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 7.8e-63 244.6 161 73.9
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 7.8e-63 244.6 160 76.9
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 1.0e-62 244.2 154 77.3
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.0e-62 244.2 208 63.5
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.3e-62 243.8 161 73.3
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 1.3e-62 243.8 160 75.0
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 1.7e-62 243.4 201 66.7
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 3.0e-62 242.7 175 70.9
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 5.0e-62 241.9 170 70.0
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 1.1e-61 240.7 194 63.9
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 1.1e-61 240.7 191 67.5
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 1.5e-61 240.4 166 71.7
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 1.9e-61 240.0 152 76.3
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 3.3e-61 239.2 238 57.1
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 5.6e-61 238.4 160 73.8
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 5.6e-61 238.4 188 61.7
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 9.5e-61 237.7 159 72.3
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.2e-60 237.3 150 75.3
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.2e-60 237.3 144 75.7
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 2.8e-60 236.1 167 68.9
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 4.7e-60 235.3 151 74.2
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 6.2e-60 235.0 151 74.8
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 6.2e-60 235.0 166 71.1
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 8.1e-60 234.6 162 72.2
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 8.1e-60 234.6 163 71.8
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 1.8e-59 233.4 141 76.6
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 1.8e-59 233.4 167 69.5
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 2.0e-58 229.9 126 86.5
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 2.6e-58 229.6 160 71.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 3.4e-58 229.2 181 65.7
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 4.4e-58 228.8 177 65.5
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 7.5e-58 228.0 160 71.2
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 1.3e-57 227.3 161 68.9
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.7e-57 226.9 160 70.0
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 3.7e-57 225.7 168 65.5
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 4.9e-57 225.3 159 66.0
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 1.4e-56 223.8 160 70.0
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.4e-56 223.8 160 70.0
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.4e-56 223.8 160 70.0
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.4e-56 223.0 160 70.0
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 7.1e-56 221.5 160 69.4
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 7.1e-56 221.5 160 69.4
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.2e-55 220.7 161 65.2
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 1.6e-55 220.3 160 68.1
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 2.1e-55 219.9 145 71.7
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 2.7e-55 219.5 160 65.0
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.1e-53 214.2 162 66.0
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 4.4e-50 202.2 160 63.8
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 2.9e-49 199.5 139 72.7
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 4.9e-49 198.7 188 59.0
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.1e-47 193.4 187 55.1
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 3.5e-47 192.6 160 58.1
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 7.8e-47 191.4 134 64.9
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 1.0e-46 191.0 192 56.2
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 2.4e-40 169.9 105 75.2
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 7.8e-39 164.9 179 49.2
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.0e-38 162.9 88 86.4
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 2.1e-36 156.8 140 52.1
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 2.8e-36 156.4 162 54.9
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.2e-33 146.7 90 76.7
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 9.3e-32 141.4 90 74.4
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.6e-31 140.6 88 73.9
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 3.5e-31 139.4 92 70.7
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 7.9e-31 138.3 96 74.0
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 1.2e-23 114.4 76 71.1
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 1.3e-22 110.9 71 73.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.6e-18 96.7 108 52.8
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.9e-17 92.4 58 70.7
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.0e-14 84.7 128 47.7
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.9e-13 80.5 144 32.6
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 2.5e-13 80.1 153 30.7
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.6e-12 77.4 189 30.7
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.6e-12 77.4 184 32.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 2.2e-12 77.0 184 32.1
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.8e-12 76.6 198 32.8
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 3.7e-12 76.3 72 54.2
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 8.2e-12 75.1 145 33.8
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.8e-11 73.9 145 33.1
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.4e-11 73.6 195 30.3
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 4.1e-11 72.8 69 58.0
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 5.3e-11 72.4 180 31.1
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 6.9e-11 72.0 177 29.9
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 6.9e-11 72.0 94 44.7
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 9.0e-11 71.6 177 29.9
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 1.2e-10 71.2 134 35.8
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.2e-10 71.2 105 39.0
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.5e-10 70.9 177 29.9
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 2.6e-10 70.1 158 32.3
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 3.4e-10 69.7 132 32.6
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 3.4e-10 69.7 170 30.6
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 4.5e-10 69.3 139 33.1
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 4.5e-10 69.3 76 51.3
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.0e-09 68.2 120 34.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.0e-09 68.2 206 28.6
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.0e-09 68.2 149 28.2
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.3e-09 67.8 157 31.2
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.3e-09 67.8 164 31.7
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.7e-09 67.4 128 34.4
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.7e-09 67.4 128 34.4
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.7e-09 67.4 128 34.4
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.2e-09 67.0 133 31.6
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 2.2e-09 67.0 139 31.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.8e-09 66.2 142 31.0
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 3.8e-09 66.2 85 45.9
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 3.8e-09 66.2 76 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 6.5e-09 65.5 137 32.1
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 6.5e-09 65.5 133 32.3
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 8.5e-09 65.1 110 33.6
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 8.5e-09 65.1 209 28.7
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 8.5e-09 65.1 209 28.7
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.1e-08 64.7 186 28.0
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.5e-08 63.5 30 86.7
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.6e-07 60.8 197 29.4
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.4e-06 57.8 106 33.0
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 2.3e-06 57.0 80 36.2
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 3.9e-06 56.2 126 30.2


User provided reference genes

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