Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.2e-61 239.6 116 100.0
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 5.7e-51 204.1 116 82.8
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.4e-49 199.5 117 82.1
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 3.4e-48 194.9 116 81.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.0e-47 193.4 118 78.0
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 7.9e-45 183.7 120 73.3
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 7.9e-45 183.7 120 73.3
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.9e-45 183.7 111 79.3
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.0e-44 183.3 114 73.7
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 5.1e-44 181.0 116 73.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 6.7e-44 180.6 115 73.0
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 2.5e-43 178.7 121 71.9
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 7.4e-43 177.2 121 71.9
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 7.4e-43 177.2 111 74.8
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 4.1e-41 171.4 105 73.3
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 5.3e-41 171.0 109 70.6
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 6.9e-41 170.6 105 73.3
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.2e-40 169.9 109 71.6
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.2e-40 169.9 109 69.7
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.5e-40 169.5 114 69.3
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 3.4e-40 168.3 107 72.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.5e-40 167.9 115 67.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 5.9e-40 167.5 111 70.3
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 7.7e-40 167.2 105 74.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-39 166.8 109 69.7
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.7e-39 166.0 102 73.5
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.9e-39 165.2 105 72.4
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.8e-39 164.9 115 66.1
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 5.0e-39 164.5 107 71.0
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 5.0e-39 164.5 107 71.0
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 5.0e-39 164.5 115 67.8
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.5e-39 164.1 111 69.4
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 8.5e-39 163.7 112 71.4
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 8.5e-39 163.7 106 70.8
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-38 163.3 96 76.0
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.1e-38 163.3 102 73.5
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.4e-38 162.9 116 66.4
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.4e-38 162.9 111 67.6
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.9e-38 162.5 113 66.4
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 1.9e-38 162.5 118 69.5
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.9e-38 162.5 89 80.9
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.9e-38 162.5 111 68.5
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 2.5e-38 162.2 110 69.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.5e-38 162.2 107 69.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 3.2e-38 161.8 101 76.2
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.2e-38 161.8 108 72.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 3.2e-38 161.8 101 73.3
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.2e-38 161.4 103 71.8
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 5.5e-38 161.0 115 66.1
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 5.5e-38 161.0 107 69.2
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.5e-38 161.0 117 70.1
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 5.5e-38 161.0 111 67.6
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 5.5e-38 161.0 111 67.6
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.2e-38 160.6 104 74.0
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 9.4e-38 160.2 108 72.2
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.4e-38 160.2 111 66.7
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 9.4e-38 160.2 109 71.6
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.2e-37 159.8 104 69.2
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.2e-37 159.8 107 69.2
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.2e-37 159.8 96 75.0
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.6e-37 159.5 104 73.1
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.1e-37 159.1 108 70.4
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 2.1e-37 159.1 96 75.0
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.1e-37 159.1 117 65.0
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.1e-37 159.1 107 69.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.7e-37 158.7 117 68.4
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.7e-37 158.7 117 68.4
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.7e-37 158.7 117 68.4
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.7e-37 158.7 117 68.4
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 2.7e-37 158.7 101 69.3
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 3.6e-37 158.3 104 73.1
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.6e-37 158.3 108 70.4
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.6e-37 158.3 108 70.4
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.7e-37 157.9 94 75.5
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 4.7e-37 157.9 108 66.7
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 4.7e-37 157.9 102 71.6
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 7.9e-37 157.1 96 75.0
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.0e-36 156.8 104 69.2
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.8e-36 156.0 112 67.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.3e-36 155.6 107 65.4
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.3e-36 155.6 117 67.5
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.3e-36 155.6 96 72.9
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 5.1e-36 154.5 116 63.8
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.7e-36 154.1 111 65.8
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 8.8e-36 153.7 99 69.7
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 8.8e-36 153.7 111 64.9
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 8.8e-36 153.7 104 68.3
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.1e-35 153.3 113 66.4
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.5e-35 152.9 108 69.4
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.0e-35 152.5 112 64.3
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 2.6e-35 152.1 84 79.8
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 2.6e-35 152.1 84 79.8
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.6e-35 152.1 112 67.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.6e-35 152.1 97 70.1
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.3e-35 151.8 112 67.0
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 4.4e-35 151.4 112 66.1
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.4e-35 151.4 106 66.0
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 5.7e-35 151.0 75 86.7
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 5.7e-35 151.0 75 86.7
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 5.7e-35 151.0 111 65.8
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 7.4e-35 150.6 112 67.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 7.4e-35 150.6 112 67.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 7.4e-35 150.6 84 79.8
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 7.4e-35 150.6 79 82.3
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-34 149.4 79 81.0
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 2.2e-34 149.1 78 80.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 2.2e-34 149.1 108 67.6
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.2e-34 149.1 78 79.5
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.2e-34 149.1 82 78.0
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.8e-34 148.7 79 79.7
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.7e-34 148.3 108 67.6
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.7e-34 148.3 108 67.6
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.7e-34 148.3 108 67.6
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.7e-34 148.3 112 65.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.7e-34 148.3 79 79.7
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.8e-34 147.9 111 64.0
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 4.8e-34 147.9 109 64.2
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 4.8e-34 147.9 114 62.3
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.8e-34 147.9 112 64.3
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 6.3e-34 147.5 107 64.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 6.3e-34 147.5 79 79.7
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.1e-33 146.7 79 78.5
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.1e-33 146.7 79 78.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.1e-33 146.7 79 78.5
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.4e-33 146.4 79 79.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 1.8e-33 146.0 82 75.6
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.1e-33 145.2 87 71.3
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.1e-33 144.8 112 63.4
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 7.0e-33 144.1 83 78.3
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 1.5e-32 142.9 79 77.2
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.6e-32 142.1 108 65.7
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 3.5e-32 141.7 88 71.6
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.0e-31 140.2 84 73.8
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.3e-31 139.8 118 59.3
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 8.5e-31 137.1 92 67.4
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 8.5e-31 137.1 111 60.4
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 4.2e-30 134.8 101 63.4
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 4.2e-30 134.8 101 63.4
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 5.2e-28 127.9 75 72.0
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.2e-26 122.5 75 69.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.4e-25 119.8 81 64.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 7.7e-24 114.0 57 86.0
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.9e-22 109.4 84 59.5
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 2.1e-21 105.9 80 67.5
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 6.1e-21 104.4 97 52.6
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 1.2e-19 100.1 69 65.2
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 5.7e-19 97.8 85 56.5
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 6.3e-18 94.4 61 73.8
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.4e-17 93.2 61 67.2
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 7.0e-17 90.9 112 46.4
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.0e-16 89.4 71 56.3
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 2.5e-14 82.4 73 49.3
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.1e-13 79.3 62 64.5
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 5.2e-12 74.7 100 44.0
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.7e-10 69.7 57 57.9
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 1.1e-06 57.0 42 64.3


User provided reference genes

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