Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 4.4e-124 448.0 227 100.0
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 7.8e-97 357.5 226 78.3
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.1e-95 353.6 224 78.6
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 2.4e-93 345.9 226 74.8
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 9.3e-90 334.0 222 72.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.0e-88 330.5 224 71.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 8.7e-88 327.4 222 71.6
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.3e-87 325.5 222 71.2
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 4.3e-87 325.1 226 69.9
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 4.3e-87 325.1 222 69.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.3e-86 323.6 222 70.7
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.1e-86 322.8 224 69.6
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.8e-86 322.4 222 70.3
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.8e-86 322.4 226 69.0
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.6e-86 322.0 226 68.1
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.8e-86 321.6 225 67.6
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.8e-86 321.6 222 70.3
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.1e-85 320.5 222 70.7
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.1e-85 320.5 226 68.1
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.8e-85 319.7 224 68.3
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.4e-85 319.3 226 70.4
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 5.3e-85 318.2 226 68.6
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 6.9e-85 317.8 227 68.7
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.9e-85 317.8 222 69.4
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 9.0e-85 317.4 228 69.7
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 2.6e-84 315.8 222 68.0
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 5.8e-84 314.7 223 68.2
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.9e-83 311.6 223 67.7
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 6.4e-83 311.2 224 67.9
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 8.4e-83 310.8 224 67.4
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 1.1e-82 310.5 223 69.1
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.4e-82 310.1 222 66.7
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-82 310.1 223 67.3
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.4e-82 309.3 222 66.7
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 4.2e-82 308.5 227 66.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 4.2e-82 308.5 222 67.1
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 7.1e-82 307.8 222 67.1
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.2e-81 307.0 223 66.4
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.6e-81 306.6 223 65.9
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.5e-81 305.4 222 64.0
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 4.6e-81 305.1 224 68.8
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 4.6e-81 305.1 225 67.6
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.0e-80 303.9 229 63.8
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.8e-80 303.1 222 65.3
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.8e-80 303.1 222 65.3
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.0e-80 302.4 222 65.3
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 3.0e-80 302.4 222 64.9
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 3.0e-80 302.4 221 65.2
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 8.7e-80 300.8 222 63.1
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 8.7e-80 300.8 222 66.2
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 8.7e-80 300.8 222 64.4
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 8.7e-80 300.8 222 66.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.1e-79 300.4 226 65.0
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 1.1e-79 300.4 222 66.7
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 1.5e-79 300.1 222 64.0
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.5e-79 300.1 210 68.1
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.5e-79 300.1 222 64.9
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.9e-79 299.7 222 64.0
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.9e-79 299.7 222 65.8
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.3e-79 298.9 222 64.9
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 5.6e-79 298.1 222 63.1
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 5.6e-79 298.1 230 64.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 7.4e-79 297.7 222 62.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 1.3e-78 297.0 222 64.4
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.3e-78 297.0 222 64.9
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.6e-78 296.6 222 63.1
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.8e-78 295.8 222 64.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 4.8e-78 295.0 222 63.5
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 4.8e-78 295.0 222 64.9
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 6.2e-78 294.7 222 60.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.2e-78 294.7 228 60.1
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 8.1e-78 294.3 222 64.9
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 8.1e-78 294.3 222 64.9
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 8.1e-78 294.3 218 64.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 8.1e-78 294.3 220 63.6
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 8.1e-78 294.3 224 62.5
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.1e-77 293.9 246 61.8
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.1e-77 293.9 221 63.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 1.4e-77 293.5 222 64.4
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.4e-77 293.5 222 63.1
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 3.1e-77 292.4 218 66.1
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 3.1e-77 292.4 218 66.1
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.1e-77 292.4 222 64.0
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 5.3e-77 291.6 210 66.2
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 9.0e-77 290.8 218 64.2
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 9.0e-77 290.8 218 64.2
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 9.0e-77 290.8 222 63.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.2e-76 290.4 212 66.5
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-76 290.0 220 60.9
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 2.0e-76 289.7 210 62.9
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.6e-76 289.3 219 65.8
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.6e-76 289.3 224 63.8
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 3.4e-76 288.9 223 63.7
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.5e-76 288.5 220 60.9
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 5.8e-76 288.1 212 66.0
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.6e-76 287.7 222 62.6
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.6e-76 287.7 222 62.6
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.7e-75 286.6 222 62.6
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 2.2e-75 286.2 224 63.4
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 2.2e-75 286.2 222 62.6
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.2e-75 286.2 221 62.9
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 2.9e-75 285.8 212 62.3
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.9e-75 285.8 222 63.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.9e-75 285.8 221 60.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.9e-75 285.8 223 63.2
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.5e-74 282.7 213 63.4
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 3.2e-74 282.3 221 62.4
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 3.2e-74 282.3 228 58.8
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 3.2e-74 282.3 228 59.2
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.2e-74 282.0 221 59.7
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 7.1e-74 281.2 221 62.0
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 7.9e-73 277.7 219 62.6
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.0e-72 277.3 309 51.1
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 5.1e-72 275.0 221 60.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.5e-71 273.5 222 59.9
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.9e-71 273.1 323 47.4
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 6.2e-70 268.1 221 59.7
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.3e-67 260.4 180 73.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.4e-66 256.9 229 59.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.2e-65 253.8 221 55.7
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 6.7e-64 248.1 229 58.5
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 5.7e-63 245.0 179 68.2
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 2.2e-62 243.0 229 54.6
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.2e-60 237.3 354 39.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 2.0e-60 236.5 153 73.2
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.6e-60 236.1 153 75.2
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.9e-58 229.9 152 71.1
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.3e-54 217.2 152 67.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.4e-48 197.2 130 70.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 2.0e-47 193.4 125 72.8
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 4.4e-47 192.2 168 57.7
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 2.6e-44 183.0 139 64.0
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 1.7e-43 180.3 107 78.5
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 7.2e-42 174.9 196 49.5
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 9.4e-42 174.5 111 72.1
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 9.4e-42 174.5 111 72.1
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.5e-39 167.2 99 77.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 5.3e-37 158.7 221 40.3
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 2.9e-35 152.9 95 75.8
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.7e-33 146.4 191 39.3
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.3e-30 137.5 116 57.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.1e-29 134.4 115 58.3
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 7.0e-29 131.7 115 53.9
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 3.5e-28 129.4 83 73.5
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.3e-27 127.5 116 53.4
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 4.7e-25 119.0 140 44.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.7e-19 100.5 118 44.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.9e-18 97.1 81 55.6
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 1.3e-14 84.3 125 39.2
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 6.4e-14 82.0 57 66.7
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 2.3e-11 73.6 47 70.2
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.4e-08 64.3 78 44.9
Potri.001G092800 Populus trichocarpa HOM05D006525 ORTHO05D007845 5.8e-07 58.9 167 25.1
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.5e-07 58.5 48 54.2
Sabra01G0069100 Salix brachista HOM05D006525 ORTHO05D007845 4.9e-06 55.8 171 25.1
TWI15G0402 Tripterygium wilfordii HOM05D006525 ORTHO05D007845 6.4e-06 55.5 169 24.9
Os05g0214400 Oryza sativa ssp. japonica HOM05D006525 ORTHO05D007845 8.3e-06 55.1 147 26.5


User provided reference genes

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