Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.0e-137 493.4 254 100.0
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 2.5e-51 206.5 289 48.4
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.8e-49 200.3 282 46.1
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 5.8e-48 195.3 298 45.0
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.7e-47 192.6 308 44.2
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 6.4e-47 191.8 296 43.9
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 6.4e-47 191.8 278 43.9
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 4.1e-46 189.1 296 41.6
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 5.4e-46 188.7 278 47.1
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 3.5e-45 186.0 307 42.3
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 3.5e-45 186.0 307 42.3
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 6.0e-45 185.3 295 44.7
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 6.0e-45 185.3 288 43.4
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 5.0e-44 182.2 279 43.7
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 1.1e-43 181.0 285 43.5
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.5e-43 180.6 281 44.1
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.5e-43 180.6 308 39.9
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.1e-42 176.8 288 42.0
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.7e-42 175.6 303 39.9
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 4.7e-42 175.6 300 40.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 6.2e-42 175.3 258 44.2
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 8.1e-42 174.9 302 41.7
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.1e-41 174.5 296 41.2
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.4e-41 174.1 305 38.7
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.3e-41 173.3 301 40.9
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 8.9e-41 171.4 292 42.1
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 3.7e-39 166.0 295 38.0
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.7e-39 166.0 256 43.4
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 4.9e-39 165.6 274 38.7
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 1.1e-38 164.5 296 38.2
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.1e-38 164.5 256 43.4
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 1.4e-38 164.1 300 41.3
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.9e-38 163.7 259 42.9
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 7.1e-38 161.8 302 39.4
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 2.1e-37 160.2 265 40.0
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.0e-36 157.9 302 39.1
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 3.0e-36 156.4 288 37.2
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 3.0e-36 156.4 276 40.6
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.0e-36 156.4 269 42.8
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 3.9e-36 156.0 298 37.9
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 5.1e-36 155.6 276 39.1
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 6.6e-36 155.2 275 38.5
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 6.6e-36 155.2 292 40.4
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 6.6e-36 155.2 277 37.5
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.6e-36 154.8 299 38.8
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.1e-35 154.5 256 40.2
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 1.5e-35 154.1 255 40.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 2.5e-35 153.3 255 40.0
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 4.3e-35 152.5 301 38.2
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 7.3e-35 151.8 274 39.1
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 7.3e-35 151.8 259 40.5
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 7.3e-35 151.8 262 38.9
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 7.3e-35 151.8 274 37.6
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 9.5e-35 151.4 223 42.2
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 2.1e-34 150.2 281 36.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 6.2e-34 148.7 275 37.5
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.1e-33 147.9 292 39.4
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.8e-33 147.1 291 39.2
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.3e-33 146.7 282 39.0
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 4.0e-33 146.0 256 40.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 4.0e-33 146.0 276 39.5
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 6.8e-33 145.2 294 38.4
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 1.2e-32 144.4 245 41.2
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.5e-32 144.1 271 39.9
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 2.0e-32 143.7 275 38.9
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 5.8e-32 142.1 264 37.1
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 7.6e-32 141.7 298 36.2
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 9.9e-32 141.4 171 45.6
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 9.9e-32 141.4 252 38.1
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 1.3e-31 141.0 279 36.9
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 1.3e-31 141.0 307 37.1
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 1.7e-31 140.6 302 39.1
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 8.4e-31 138.3 296 40.5
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.1e-30 137.9 291 38.1
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.4e-30 136.7 258 38.4
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 3.2e-30 136.3 278 37.1
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 3.2e-30 136.3 287 34.5
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.1e-30 136.0 314 35.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 5.4e-30 135.6 287 40.1
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 7.1e-30 135.2 279 34.4
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 9.2e-30 134.8 284 36.3
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.2e-29 134.4 285 40.0
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.6e-29 134.0 290 37.6
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.1e-29 133.7 284 40.1
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.7e-29 133.3 263 35.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 3.5e-29 132.9 253 41.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 6.0e-29 132.1 287 39.4
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.0e-28 131.3 275 40.0
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.3e-28 131.0 287 39.4
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.9e-28 129.4 291 37.8
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.1e-27 127.9 294 37.4
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.5e-27 126.7 255 36.9
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.2e-26 124.4 280 37.1
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 6.2e-26 122.1 289 35.3
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 6.2e-26 122.1 237 39.7
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.1e-25 121.3 272 36.0
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.4e-25 120.9 298 35.9
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.4e-25 120.9 271 35.8
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.8e-25 120.6 256 34.8
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.2e-25 119.0 181 43.1
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 8.9e-25 118.2 283 37.8
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.5e-24 117.5 252 34.1
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 2.0e-24 117.1 161 49.7
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 3.4e-24 116.3 272 34.9
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.4e-24 116.3 292 33.9
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 5.8e-24 115.5 272 34.9
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 5.8e-24 115.5 278 33.1
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.8e-24 115.5 260 34.2
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 5.8e-24 115.5 289 33.9
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 9.9e-24 114.8 269 36.4
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.3e-23 114.4 259 37.1
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.3e-23 114.4 270 34.4
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 1.7e-23 114.0 264 35.6
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.2e-23 113.6 291 32.0
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 3.8e-23 112.8 274 32.8
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 4.9e-23 112.5 275 34.9
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 4.9e-23 112.5 275 34.9
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 4.9e-23 112.5 275 34.9
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 4.9e-23 112.5 275 34.9
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 4.9e-23 112.5 262 36.3
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.9e-22 110.5 267 34.8
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.9e-22 110.5 286 33.6
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.4e-22 110.2 286 32.2
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 3.2e-22 109.8 279 34.4
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 4.2e-22 109.4 249 36.9
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 7.1e-22 108.6 279 33.7
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 7.1e-22 108.6 273 33.7
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.6e-21 107.5 257 35.4
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 2.7e-21 106.7 271 33.9
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.5e-21 106.3 250 36.8
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 4.6e-21 105.9 250 36.0
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 6.0e-21 105.5 280 31.8
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 6.0e-21 105.5 277 32.5
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 7.8e-21 105.1 283 32.2
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 2.3e-20 103.6 257 32.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 3.0e-20 103.2 270 33.0
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 3.0e-20 103.2 279 33.0
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 3.9e-20 102.8 281 31.0
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.9e-20 102.8 281 33.8
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 5.1e-20 102.4 273 32.2
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 6.6e-20 102.1 268 33.6
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 8.7e-20 101.7 261 33.0
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-19 101.3 265 33.6
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.1e-19 101.3 265 33.6
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-19 100.5 272 34.2
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 2.5e-19 100.1 268 33.6
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.6e-19 99.0 284 31.0
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 5.6e-19 99.0 185 41.1
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 1.3e-18 97.8 196 39.8
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.3e-18 97.8 198 39.9
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.6e-18 97.4 253 34.4
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.8e-18 96.7 264 33.3
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.6e-18 96.3 279 33.7
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 4.8e-18 95.9 255 32.5
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 4.8e-18 95.9 261 33.0
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 8.1e-18 95.1 273 29.7
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 8.1e-18 95.1 258 32.6
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 1.1e-17 94.7 292 29.8
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.4e-17 94.4 177 38.4
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 2.4e-17 93.6 267 32.2
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 3.1e-17 93.2 269 32.0
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 3.1e-17 93.2 250 33.2
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.3e-17 92.4 259 36.7
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 9.0e-17 91.7 240 31.2
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 1.5e-16 90.9 237 33.8
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 2.6e-16 90.1 242 31.0
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 3.8e-15 86.3 87 50.6
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 3.2e-14 83.2 229 33.2
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 5.4e-14 82.4 258 30.2
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 7.1e-14 82.0 88 48.9
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.0e-13 79.0 262 30.5
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 1.0e-12 78.2 252 31.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.1e-11 74.7 62 53.2
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-11 74.3 203 31.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 3.3e-11 73.2 97 43.3
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.6e-11 72.4 272 30.5
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 2.8e-10 70.1 143 36.4
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.1e-09 68.2 260 30.8
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 1.1e-09 68.2 254 29.1
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 3.1e-09 66.6 148 37.2
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.5e-08 64.3 94 41.5
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 2.4e-06 57.0 133 34.6
Zm00001eb160900 Zea mays HOM05D015210 ORTHO05D003958 5.5e-06 55.8 92 40.2
Zm00001eb160960 Zea mays HOM05D015210 ORTHO05D003958 5.5e-06 55.8 92 40.2
Zm00001eb160940 Zea mays HOM05D015210 ORTHO05D003958 7.1e-06 55.5 90 40.0


User provided reference genes

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