Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.6e-158 562.8 290 100.0
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 5.5e-87 325.1 283 64.3
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 1.2e-86 323.9 226 75.7
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.6e-86 323.6 291 64.3
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 3.6e-86 322.4 226 72.6
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 5.2e-85 318.5 245 69.0
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 8.8e-85 317.8 275 64.4
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.0e-84 316.6 220 73.2
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 4.4e-84 315.5 224 72.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 7.4e-84 314.7 225 73.3
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.2e-83 313.2 243 69.5
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 8.2e-83 311.2 265 64.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 8.2e-83 311.2 221 71.9
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 8.2e-83 311.2 226 72.1
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 3.1e-82 309.3 266 61.3
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 9.1e-82 307.8 279 62.0
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 9.1e-82 307.8 216 72.7
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-81 307.4 288 60.4
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.2e-81 307.4 226 71.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 1.6e-81 307.0 219 71.7
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-81 307.0 259 64.5
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.6e-81 307.0 260 64.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.0e-81 306.6 288 60.4
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.0e-81 306.6 262 63.0
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 2.0e-81 306.6 243 67.1
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.6e-81 306.2 291 59.8
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 4.5e-81 305.4 214 72.9
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.5e-81 305.4 222 68.9
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.9e-81 305.1 229 67.7
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 5.9e-81 305.1 238 67.2
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 7.7e-81 304.7 235 68.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.0e-80 304.3 277 61.0
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.0e-80 304.3 211 74.4
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.7e-80 303.5 249 65.1
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.2e-80 303.1 235 68.1
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.2e-80 303.1 243 66.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.2e-80 303.1 255 62.4
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.2e-80 303.1 272 60.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.9e-80 302.8 256 62.9
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.9e-80 302.8 226 69.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.8e-80 302.4 279 61.6
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.0e-80 302.0 229 67.7
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.5e-80 301.6 275 62.2
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 6.5e-80 301.6 243 65.8
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.5e-80 301.2 288 60.1
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 8.5e-80 301.2 273 60.8
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.9e-79 300.1 216 70.4
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.9e-79 300.1 229 67.2
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.9e-79 300.1 282 60.3
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.9e-79 300.1 229 68.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-79 299.7 250 64.8
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-79 299.7 250 64.8
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 3.2e-79 299.3 226 68.6
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 4.2e-79 298.9 266 62.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 9.4e-79 297.7 199 75.4
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.2e-78 297.4 210 72.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.1e-78 296.6 227 68.3
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.7e-78 296.2 209 72.7
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 4.7e-78 295.4 251 64.9
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 4.7e-78 295.4 216 70.4
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.4e-77 293.9 236 65.7
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 1.4e-77 293.9 250 63.6
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.7e-77 291.6 242 63.6
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 8.8e-77 291.2 211 73.0
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.6e-76 289.7 199 76.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 4.4e-76 288.9 237 63.3
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 7.5e-76 288.1 250 61.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 9.7e-76 287.7 267 61.0
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 9.7e-76 287.7 250 61.6
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.7e-75 287.0 214 66.4
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.7e-75 287.0 215 70.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.2e-75 286.6 212 67.5
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.2e-75 286.6 199 73.4
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 2.8e-75 286.2 207 70.0
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.8e-75 286.2 243 63.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 6.3e-75 285.0 199 74.9
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 6.3e-75 285.0 211 71.6
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 8.2e-75 284.6 213 68.1
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 8.2e-75 284.6 220 68.6
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.1e-74 284.3 214 65.4
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.4e-74 283.1 291 57.4
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 4.1e-74 282.3 211 69.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 4.1e-74 282.3 267 59.6
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 4.1e-74 282.3 214 67.3
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 7.0e-74 281.6 215 67.4
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 7.0e-74 281.6 226 65.9
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.6e-73 280.4 222 66.7
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 4.5e-73 278.9 223 68.6
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.9e-73 278.5 233 63.9
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-72 277.3 245 62.4
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 6.5e-72 275.0 241 64.7
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 8.5e-72 274.6 245 62.0
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 1.1e-71 274.2 200 69.5
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 3.2e-71 272.7 273 58.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 4.2e-71 272.3 241 64.3
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 4.2e-71 272.3 241 64.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 5.5e-71 271.9 214 67.3
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 7.2e-71 271.6 205 66.8
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 9.4e-71 271.2 209 65.6
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-70 270.8 272 58.5
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.1e-70 270.0 194 72.7
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.7e-70 269.6 269 58.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 6.1e-70 268.5 198 69.2
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 6.1e-70 268.5 188 74.5
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 8.0e-70 268.1 183 73.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 3.0e-69 266.2 200 67.5
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.2e-69 265.4 269 57.2
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 6.8e-69 265.0 233 62.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.2e-68 264.2 200 69.0
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.5e-68 261.5 201 69.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.5e-68 261.5 225 62.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 7.5e-68 261.5 201 66.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 9.8e-68 261.2 198 67.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.8e-67 259.6 193 68.4
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.0e-65 253.4 212 61.3
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.0e-65 253.4 199 64.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.5e-63 247.3 178 70.2
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 9.5e-63 244.6 178 70.8
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.6e-62 243.8 178 70.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 6.1e-62 241.9 180 68.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 6.8e-61 238.4 267 50.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.8e-61 238.0 209 59.8
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 7.5e-60 235.0 185 68.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 7.5e-60 235.0 268 49.6
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 3.7e-59 232.6 269 48.3
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 3.5e-57 226.1 170 69.4
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.0e-53 213.0 166 66.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.0e-53 213.0 166 66.9
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 5.2e-53 212.2 182 61.5
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 4.9e-51 205.7 230 54.3
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 2.4e-50 203.4 263 48.3
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 7.0e-50 201.8 222 54.1
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.1e-47 194.5 131 71.8
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.6e-46 190.7 172 55.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.4e-45 187.6 191 56.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 4.1e-42 176.0 112 74.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.4e-42 175.6 198 46.5
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 7.5e-36 155.2 112 67.9
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.5e-31 140.2 219 44.3
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 3.3e-31 139.8 94 72.3
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.1e-30 137.1 112 62.5
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 2.2e-27 127.1 210 35.2
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 2.4e-26 123.6 95 69.5
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 7.1e-26 122.1 228 34.2
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.7e-25 120.2 202 41.1
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.3e-24 117.1 212 39.2
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.3e-23 113.2 222 33.8
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 8.9e-21 105.1 125 50.4
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 4.9e-19 99.4 71 69.0
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.1e-16 89.4 83 57.8
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 7.3e-15 85.5 132 43.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.4e-13 80.5 114 45.6
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.7e-11 74.3 65 61.5
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.2e-09 68.2 65 55.4
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 5.1e-08 62.8 67 55.2
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.9e-07 60.8 36 75.0
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 2.1e-06 57.4 158 31.0


User provided reference genes

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