Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.2e-294 1015.8 529 100.0
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 2.6e-292 1008.1 529 99.4
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 3.6e-169 599.0 529 65.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.2e-167 594.0 535 64.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 9.2e-157 557.8 530 61.5
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.3e-155 553.9 565 57.7
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.9e-139 499.2 558 55.7
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.2e-134 483.4 526 55.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 6.6e-131 471.9 540 53.9
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 1.4e-128 464.2 553 54.1
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.9e-126 455.7 534 52.8
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 3.2e-125 453.0 557 54.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 9.3e-125 451.4 554 53.4
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.6e-124 450.7 563 52.0
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.0e-124 448.7 555 52.8
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.0e-123 448.0 560 50.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.9e-123 446.0 570 51.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.5e-122 444.1 568 51.2
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.5e-122 444.1 546 52.4
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 3.3e-122 443.0 549 51.4
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 3.3e-122 443.0 605 49.9
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.3e-121 441.0 561 51.2
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 1.6e-121 440.7 546 51.8
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 2.8e-121 439.9 556 50.4
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 6.2e-121 438.7 552 51.8
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 8.1e-121 438.3 554 52.7
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-120 437.6 540 51.5
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.4e-120 436.8 550 52.2
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.0e-120 436.0 573 51.5
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.2e-119 434.5 548 49.8
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.3e-118 431.0 542 51.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.9e-118 429.9 535 52.3
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.4e-117 426.8 548 50.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 5.5e-117 425.6 548 50.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 7.1e-117 425.2 553 50.3
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.7e-116 423.3 538 49.8
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 4.6e-116 422.5 551 50.6
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.9e-116 421.8 543 50.8
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.3e-115 420.2 516 53.1
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 8.7e-115 418.3 555 50.1
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.1e-114 417.9 538 49.8
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 4.3e-114 416.0 554 48.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.3e-113 414.5 544 49.3
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.1e-112 409.8 559 48.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 4.5e-111 406.0 543 50.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 7.6e-111 405.2 556 49.3
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 4.9e-110 402.5 534 48.7
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.4e-109 401.0 540 49.6
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 9.3e-109 398.3 551 46.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 9.3e-109 398.3 558 49.6
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 9.3e-109 398.3 559 46.7
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-108 397.5 527 48.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.1e-108 397.1 573 48.3
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.1e-108 397.1 527 48.6
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.3e-107 393.7 552 46.9
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.0e-107 393.3 548 46.0
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 8.7e-107 391.7 533 47.3
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.5e-106 391.0 563 47.8
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 3.3e-106 389.8 557 48.5
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 7.4e-106 388.7 562 47.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 7.4e-106 388.7 560 48.4
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 7.4e-106 388.7 553 46.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-105 387.5 527 47.8
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.6e-105 387.5 588 45.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.8e-105 386.7 547 46.4
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.8e-105 386.0 543 47.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.4e-104 384.4 547 46.8
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.4e-104 383.6 554 46.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.1e-104 382.9 573 46.8
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 1.2e-103 381.3 555 49.2
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.7e-102 377.5 547 49.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.7e-102 377.5 560 47.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.8e-102 376.3 558 46.2
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.1e-101 374.8 564 48.0
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 1.1e-101 374.8 633 43.6
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.1e-101 374.8 559 45.8
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 9.4e-101 371.7 557 45.8
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.6e-100 369.4 541 45.7
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 6.7e-99 365.5 582 45.4
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.5e-98 363.6 533 45.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 3.3e-98 363.2 540 45.2
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.3e-98 362.8 527 45.9
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 4.3e-98 362.8 557 44.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.2e-97 360.5 559 46.7
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 8.2e-97 358.6 431 51.3
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 4.1e-96 356.3 538 44.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 5.3e-96 355.9 577 43.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 9.1e-96 355.1 537 45.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.6e-95 353.6 552 44.7
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 5.9e-95 352.4 561 43.3
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 7.7e-95 352.1 528 46.0
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.3e-94 351.3 530 45.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-94 351.3 541 44.4
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.5e-94 349.0 541 44.2
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.4e-93 347.8 533 45.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.5e-93 347.1 561 44.0
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 9.4e-93 345.1 557 44.5
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.2e-92 344.7 563 45.1
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 5.1e-91 339.3 541 43.3
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.5e-90 337.8 540 43.9
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 5.7e-90 335.9 544 43.0
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.7e-90 335.9 541 43.3
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 7.4e-90 335.5 536 43.3
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.3e-89 334.7 537 43.6
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.3e-89 334.7 558 44.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.8e-89 333.6 535 42.2
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.4e-87 326.6 546 42.9
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.4e-87 326.6 546 42.9
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.8e-83 314.3 547 43.3
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.7e-82 309.3 357 52.4
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.3e-80 302.8 583 38.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.6e-76 291.2 728 35.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 7.0e-72 275.8 302 55.3
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.5e-66 258.1 306 52.6
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.1e-64 250.0 319 47.3
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.5e-63 246.9 529 39.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 3.5e-63 246.9 525 38.9
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 4.0e-59 233.4 525 38.1
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 4.0e-59 233.4 525 38.1
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 3.4e-58 230.3 578 36.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.0e-55 221.1 397 41.6
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.5e-53 214.2 601 34.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.0e-48 196.1 388 39.2
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 4.3e-45 186.8 176 56.2
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.4e-42 176.8 420 36.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 5.4e-40 169.9 527 33.0
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.5e-39 167.2 143 62.9
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.0e-38 165.6 271 41.0
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.6e-36 158.3 238 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.4e-35 155.2 545 32.8
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.4e-34 150.2 722 28.1
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.8e-31 139.4 183 47.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.7e-30 138.3 262 45.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.1e-30 136.7 229 41.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.0e-26 124.8 126 54.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.5e-21 108.6 199 41.2
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.3e-21 107.5 88 61.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.3e-20 105.5 236 36.4
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 5.8e-18 96.7 470 28.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.4e-16 92.0 140 42.1
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.3e-14 84.7 123 46.3
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.0e-14 84.3 92 45.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.9e-13 81.6 118 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.3e-13 80.5 520 27.7
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 9.0e-11 72.8 159 38.4
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 2.6e-10 71.2 469 26.2
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.6e-10 71.2 81 53.1
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.2e-09 68.2 167 33.5
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.1e-07 61.6 103 40.8
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.5e-07 60.8 226 29.2


User provided reference genes

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