Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 8.1e-241 836.6 417 100.0
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 2.3e-211 738.8 483 80.3
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.4e-189 666.4 388 87.4
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.9e-153 545.0 345 82.3
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 2.0e-122 443.4 405 60.2
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.2e-119 434.1 406 58.6
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 1.4e-115 420.6 382 60.2
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 5.8e-114 415.2 403 60.5
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 9.0e-107 391.3 338 59.8
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 2.7e-103 379.8 397 54.2
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 4.6e-103 379.0 396 55.1
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 1.0e-102 377.9 396 54.8
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 2.3e-102 376.7 349 58.2
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 6.7e-102 375.2 303 63.4
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 6.7e-102 375.2 304 62.8
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 1.1e-101 374.4 350 56.3
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 1.1e-101 374.4 307 62.9
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 3.3e-101 372.9 313 62.0
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 4.3e-101 372.5 288 65.6
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 3.7e-100 369.4 313 59.4
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 4.8e-100 369.0 301 62.8
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 6.2e-100 368.6 345 57.1
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 8.2e-100 368.2 317 58.7
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 1.1e-99 367.9 292 63.4
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.8e-99 367.1 313 59.4
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 2.4e-99 366.7 309 61.2
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 4.0e-99 365.9 369 54.2
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 5.3e-99 365.5 334 57.2
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 6.9e-99 365.2 308 63.0
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 6.9e-99 365.2 290 63.4
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 9.0e-99 364.8 308 61.0
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 9.0e-99 364.8 283 64.3
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 1.2e-98 364.4 334 57.2
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 1.5e-98 364.0 278 65.1
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 2.0e-98 363.6 335 57.0
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 2.6e-98 363.2 318 60.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 2.6e-98 363.2 300 62.3
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 3.4e-98 362.8 317 60.3
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.4e-98 362.8 327 58.7
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 4.5e-98 362.5 334 56.9
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 1.3e-97 360.9 279 64.9
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 1.3e-97 360.9 378 54.5
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 2.2e-97 360.1 322 59.9
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 6.5e-97 358.6 317 60.3
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 6.5e-97 358.6 305 60.7
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 8.4e-97 358.2 395 53.2
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 5.5e-96 355.5 287 62.4
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 5.5e-96 355.5 281 63.3
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 7.1e-96 355.1 308 61.7
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.6e-95 354.0 282 63.8
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.1e-95 353.6 282 65.2
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 2.7e-95 353.2 295 63.1
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 6.0e-95 352.1 333 57.4
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.0e-95 352.1 308 61.0
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 7.9e-95 351.7 304 60.2
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 7.9e-95 351.7 307 59.6
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.0e-94 351.3 306 60.5
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 8.7e-94 348.2 287 62.0
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 8.7e-94 348.2 324 57.7
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 1.5e-93 347.4 309 57.9
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 1.5e-93 347.4 306 60.5
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.9e-93 347.1 311 59.2
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 1.9e-93 347.1 391 52.7
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 4.3e-93 345.9 395 49.9
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 5.7e-93 345.5 304 60.9
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.7e-93 345.5 293 61.8
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 7.4e-93 345.1 304 59.5
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 6.3e-92 342.0 299 60.5
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.1e-91 341.3 300 58.3
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 1.1e-91 341.3 306 57.5
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 1.1e-91 341.3 334 55.7
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.4e-91 340.9 304 58.2
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.4e-91 340.9 284 60.6
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 3.1e-91 339.7 318 54.7
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.1e-91 339.3 304 58.6
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 4.1e-91 339.3 280 61.4
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 4.1e-91 339.3 306 58.2
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.5e-90 337.4 292 60.6
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 3.4e-90 336.3 281 61.2
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 4.5e-90 335.9 302 57.0
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 4.5e-90 335.9 302 57.0
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 2.2e-89 333.6 436 47.0
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.8e-89 332.8 307 57.3
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 5.0e-89 332.4 391 49.6
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 1.1e-88 331.3 390 50.0
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.5e-88 330.1 302 56.3
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 5.5e-88 328.9 306 55.2
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 5.5e-88 328.9 303 57.1
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.2e-87 327.8 389 47.6
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 2.1e-87 327.0 305 57.7
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 6.1e-87 325.5 316 54.1
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 7.9e-87 325.1 315 53.3
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 7.9e-87 325.1 340 55.9
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 1.3e-86 324.3 385 47.8
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.3e-86 323.6 285 57.5
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 2.3e-86 323.6 385 47.3
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 2.3e-86 323.6 385 47.3
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 3.0e-86 323.2 285 56.8
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 3.9e-86 322.8 294 56.1
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 6.7e-86 322.0 316 53.8
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 3.7e-84 316.2 252 63.1
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 1.1e-83 314.7 280 57.1
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 9.1e-83 311.6 280 57.9
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 2.0e-82 310.5 353 50.4
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 2.0e-82 310.5 279 58.1
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 4.5e-82 309.3 495 40.2
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 5.9e-82 308.9 279 57.0
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 3.8e-81 306.2 264 59.5
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 3.6e-79 299.7 252 59.1
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 9.7e-77 291.6 244 59.0
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.1e-75 288.1 300 55.0
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 1.3e-73 281.2 236 59.7
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 9.1e-67 258.5 247 55.1
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 1.0e-65 255.0 264 51.1
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 6.7e-62 242.3 195 62.1
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 3.3e-61 240.0 234 52.1
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 1.4e-59 234.6 152 71.7
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 9.1e-59 231.9 267 46.4
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 1.2e-47 194.9 270 44.8
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 4.5e-42 176.4 251 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 1.0e-41 175.3 139 61.2
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 3.2e-35 153.7 143 55.9
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.9e-28 130.6 152 50.0
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 1.8e-22 111.3 296 30.7
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 3.2e-19 100.5 82 63.4
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 3.0e-17 94.0 64 70.3
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 3.2e-11 73.9 47 72.3
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 9.2e-11 72.4 81 46.9
SEGI_34336 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 2.4e-06 57.8 33 84.8


User provided reference genes

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