Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.9e-176 622.5 322 100.0
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 7.5e-53 211.8 372 42.5
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 3.6e-47 193.0 368 38.6
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.9e-44 183.3 358 36.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.0e-33 148.3 368 33.2
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 7.3e-32 142.1 242 36.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 2.0e-29 134.0 358 33.2
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 3.2e-27 126.7 347 31.7
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 2.6e-21 107.1 379 29.8
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.4e-19 100.5 352 28.4
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 1.8e-17 94.4 106 51.9
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.3e-17 94.0 371 29.9
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 8.7e-17 92.0 360 28.9
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.8e-15 87.0 376 27.9
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.1e-14 85.1 253 28.1
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.4e-14 84.7 377 28.4
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.8e-14 84.3 363 26.4
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.8e-14 84.3 376 27.4
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 3.1e-14 83.6 382 25.7
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 5.3e-14 82.8 372 28.5
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 6.9e-14 82.4 367 27.8
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.5e-13 81.3 348 25.9
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.5e-13 81.3 375 26.4
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 2.6e-13 80.5 353 25.8
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 2.6e-13 80.5 378 27.8
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 3.4e-13 80.1 254 28.7
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 4.5e-13 79.7 375 25.9
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 7.6e-13 79.0 371 26.1
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 7.6e-13 79.0 361 26.9
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.0e-12 78.6 370 26.5
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 1.0e-12 78.6 369 27.1
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.7e-12 77.8 376 27.9
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.7e-12 77.8 294 29.9
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 2.9e-12 77.0 363 25.3
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.8e-12 76.6 372 25.8
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.8e-12 76.6 366 26.2
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.1e-11 75.1 391 27.1
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.1e-11 75.1 361 25.8
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.1e-11 75.1 371 25.9
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.4e-11 74.7 181 33.1
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.4e-11 74.7 368 27.2
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.9e-11 74.3 382 25.4
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 3.2e-11 73.6 373 26.3
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 3.2e-11 73.6 364 26.1
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.2e-11 73.6 382 25.7
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 7.1e-11 72.4 374 25.4
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.1e-11 72.4 373 26.5
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.1e-11 72.4 374 25.4
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 9.3e-11 72.0 382 25.4
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.2e-10 71.6 362 24.9
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.2e-10 71.6 382 27.0
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.7e-10 70.5 273 26.4
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 3.5e-10 70.1 369 24.1
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 4.6e-10 69.7 373 25.2
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 6.0e-10 69.3 367 25.3
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 7.9e-10 68.9 214 30.4
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 7.9e-10 68.9 372 24.2
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.9e-10 68.9 370 24.3
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 7.9e-10 68.9 376 25.0
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.0e-09 68.6 379 25.9
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.0e-09 68.6 365 25.8
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.3e-09 68.2 295 27.8
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.3e-09 68.2 362 23.5
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.8e-09 67.8 366 26.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.3e-09 67.4 267 28.5
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.3e-09 67.4 362 26.8
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.3e-09 67.4 368 25.3
SGA_v2.0_scaffold41G15715 Striga asiatica HOM05D008585 ORTHO05D000397 2.3e-09 67.4 74 52.7
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.0e-09 67.0 379 25.1
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 3.9e-09 66.6 362 27.1
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.9e-09 66.6 357 26.6
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 3.9e-09 66.6 366 26.5
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 3.9e-09 66.6 360 25.6
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 5.1e-09 66.2 356 24.7
SGA_v2.0_scaffold91G28036 Striga asiatica HOM05D008585 ORTHO05D000397 8.7e-09 65.5 56 60.7
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.1e-08 65.1 373 23.9
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.1e-08 65.1 290 25.9
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.5e-08 64.7 371 24.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.9e-08 64.3 217 27.6
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.9e-08 64.3 373 25.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 3.3e-08 63.5 301 25.9
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 3.3e-08 63.5 373 23.9
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 4.3e-08 63.2 372 24.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 7.4e-08 62.4 365 24.7
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 9.6e-08 62.0 306 25.5
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 9.6e-08 62.0 367 24.8
SGA_v2.0_scaffold63G21779 Striga asiatica HOM05D008585 ORTHO05D000397 2.8e-07 60.5 74 51.4
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.8e-07 60.5 92 39.1
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 3.7e-07 60.1 341 24.6
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 3.7e-07 60.1 347 26.8
SGA_v2.0_scaffold273G46471 Striga asiatica HOM05D008585 ORTHO05D000397 3.7e-07 60.1 57 59.6
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 6.3e-07 59.3 281 24.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 8.2e-07 58.9 260 27.7
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 8.2e-07 58.9 87 39.1
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 8.2e-07 58.9 335 24.8
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.1e-06 58.5 275 24.7
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.8e-06 57.8 379 25.9
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 2.4e-06 57.4 354 25.1
SGA_v2.0_scaffold449G51795 Striga asiatica HOM05D008585 ORTHO05D000397 2.4e-06 57.4 46 60.9
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 2.4e-06 57.4 370 25.9
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 3.1e-06 57.0 285 24.2
SGA_v2.0_scaffold137G35092 Striga asiatica HOM05D008585 ORTHO05D000397 4.1e-06 56.6 52 57.7
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.3e-06 56.2 289 24.2
SGA_v2.0_scaffold164G38150 Striga asiatica HOM05D008585 ORTHO05D000397 5.3e-06 56.2 52 55.8
SGA_v2.0_scaffold148G36424 Striga asiatica HOM05D008585 ORTHO05D000397 6.9e-06 55.8 49 57.1
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 9.0e-06 55.5 367 24.3
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 9.0e-06 55.5 252 24.6


User provided reference genes

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