Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold92G28167 Striga asiatica HOM05D065687 ORTHO05D051404 7.7e-103 377.1 182 100.0
SGA_v2.0_scaffold112G31605 Striga asiatica HOM05D065687 ORTHO05D051404 2.1e-31 139.8 66 100.0
MSTRG.18039 Avicennia marina HOM05D002608 ORTHO05D003838 2.9e-09 66.2 30 96.7
Migut.H01296 Erythranthe guttata HOM05D002608 ORTHO05D003838 2.9e-09 66.2 30 96.7
SalBow2G2051 Salvia bowleyana HOM05D002608 ORTHO05D003838 2.9e-09 66.2 30 96.7
SalBow6G5981 Salvia bowleyana HOM05D002608 ORTHO05D003838 2.9e-09 66.2 30 96.7
SGA_v2.0_scaffold92G28161 Striga asiatica HOM05D002608 ORTHO05D003838 2.9e-09 66.2 30 96.7
SGA_v2.0_scaffold92G28166 Striga asiatica HOM05D002608 ORTHO05D003838 2.9e-09 66.2 30 96.7
Migut.F01887 Erythranthe guttata HOM05D002608 ORTHO05D003838 6.4e-09 65.1 30 93.3
Oeu036171.1 Olea europaea HOM05D002608 ORTHO05D021346 3.2e-08 62.8 30 90.0
unitig_899.g15197 Utricularia gibba HOM05D002608 ORTHO05D003838 4.2e-08 62.4 30 90.0
Oeu049216.1 Olea europaea HOM05D002608 ORTHO05D003838 1.6e-07 60.5 30 83.3
Lalb_Chr20g0113231 Lupinus albus HOM05D002608 ORTHO05D003838 2.1e-07 60.1 30 90.0
Solyc10g084670.3 Solanum lycopersicum HOM05D002608 ORTHO05D003838 2.1e-07 60.1 30 86.7
Sopen10g034110 Solanum pennellii HOM05D002608 ORTHO05D003838 2.1e-07 60.1 30 86.7
PGSC0003DMG400010999 Solanum tuberosum HOM05D002608 ORTHO05D003838 2.1e-07 60.1 30 86.7
Cfa006672 Carpinus fangiana HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
Haze_04099 Corylus avellana HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
HanXRQChr09g0247971 Helianthus annuus HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
PSO170G1119 Papaver somniferum HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
PSO170G4769 Papaver somniferum HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
PSO357G0420 Papaver somniferum HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
PSO528G0014 Papaver somniferum HOM05D002608 ORTHO05D003838 2.7e-07 59.7 30 90.0
Actinidia21508 Actinidia chinensis HOM05D002608 ORTHO05D003838 3.5e-07 59.3 30 83.3
CSS0020825 Camellia sinensis var. sinensis HOM05D002608 ORTHO05D003838 3.5e-07 59.3 30 83.3
ECA234G4518 Erigeron canadensis HOM05D002608 ORTHO05D003031 3.5e-07 59.3 30 86.7
PGR031G1858 Punica granatum HOM05D002608 ORTHO05D003838 3.5e-07 59.3 30 83.3
Rhsim05G0135800 Rhododendron simsii HOM05D002608 ORTHO05D003838 3.5e-07 59.3 30 83.3
Lsat_1_v5_gn_1_55601 Lactuca sativa HOM05D002608 ORTHO05D003838 4.6e-07 58.9 30 90.0
SHI15014 Sapria himalayana HOM05D002608 ORTHO05D003838 4.6e-07 58.9 30 90.0
ATR0057G045 Amborella trichopoda HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
AagrBONN_evm.TU.Sc2ySwM_362.462 Anthoceros agrestis HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
CAN.G97.14 Capsicum annuum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Cpa.g.sc48.127 Carica papaya HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Cfa017421 Carpinus fangiana HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 83.3
CiPaw.07G025500 Carya illinoinensis HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
CDE06G2290 Ceratophyllum demersum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
CDE07G0225 Ceratophyllum demersum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Cc06_g02900 Coffea canephora HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Haze_20749 Corylus avellana HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 83.3
DCAR_003377 Daucus carota HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
DCAR_014838 Daucus carota HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
DCAR_022132 Daucus carota HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Dinv05264 Davidia involucrata HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Dinv24411 Davidia involucrata HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Dinv30849 Davidia involucrata HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
ECA240G3079 Erigeron canadensis HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
ECA247G1225 Erigeron canadensis HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Hma1.2p1_0472F.1_g159760 Hydrangea macrophylla HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Hma1.2p1_1441F.1_g283600 Hydrangea macrophylla HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Lsat_1_v5_gn_7_67461 Lactuca sativa HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Lj2A99G56 Lonicera japonica HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
MBI01_g01189_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
MBI17_g38311_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
MBI17_g38313_MAGBIO Magnolia biondii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Manes.08G114400 Manihot esculenta HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Manes.09G174300 Manihot esculenta HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Nn2g12763 Nelumbo nucifera HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Nitab4.5_0000202g0170 Nicotiana tabacum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Nitab4.5_0000216g0080 Nicotiana tabacum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Nitab4.5_0002077g0030 Nicotiana tabacum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Nitab4.5_0003267g0030 Nicotiana tabacum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Peaxi162Scf00039g01224 Petunia axillaris HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Peaxi162Scf01194g00134 Petunia axillaris HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
QL03p017837 Quercus lobata HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
QL93p2009_0049 Quercus lobata HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Sed0023948 Sechium edule HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
SEGI_12975 Sequoiadendron giganteum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
SEGI_14379 Sequoiadendron giganteum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Solyc09g010460.3 Solanum lycopersicum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Sopen09g005200 Solanum pennellii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
PGSC0003DMG400008926 Solanum tuberosum HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
TWI12G0370 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
TWI36G0315 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
TWI56G0709 Tripterygium wilfordii HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
TAR374G0864 Trochodendron aralioides HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
TAR383G0809 Trochodendron aralioides HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
HPP92_005911 Vanilla planifolia HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 83.3
GSVIVG01031192001 Vitis vinifera HOM05D002608 ORTHO05D003838 6.0e-07 58.5 30 86.7
Aqoxy7G00914 Aquilegia oxysepala HOM05D002608 ORTHO05D003838 7.9e-07 58.2 29 89.7
EL10Ac4g09869 Beta vulgaris HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 80.0
AUR62000719 Chenopodium quinoa HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 80.0
AUR62026623 Chenopodium quinoa HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 80.0
AUR62034877 Chenopodium quinoa HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 80.0
Eucgr.H03271 Eucalyptus grandis HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 83.3
PGR142G3882 Punica granatum HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 83.3
Hund12489 Selenicereus undatus HOM05D002608 ORTHO05D003838 7.9e-07 58.2 30 80.0
arahy.Tifrunner.gnm1.ann1.6UH7HR Arachis hypogaea HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
arahy.Tifrunner.gnm1.ann1.PFNK2V Arachis hypogaea HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
CANSAT56G4271 Cannabis sativa HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Glyma.03G172200 Glycine max HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Glyma.19G173100 Glycine max HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Lj1g0021618 Lotus japonicus HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
MD04G1196800 Malus domestica HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Medtr7g099920 Medicago truncatula HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Phvul.001G169900 Phaseolus vulgaris HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Psat3g048960 Pisum sativum HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.0e-06 57.8 30 86.7
VMungo1383G2288 Vigna mungo HOM05D002608 ORTHO05D003838 1.0e-06 57.8 30 86.7
Ah.04g154240 Amaranthus hybridus HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 80.0
CiPaw.10G143500 Carya illinoinensis HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
ClCG03G006160 Citrullus lanatus HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
ClCG03G006190 Citrullus lanatus HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Ciclev10000154m.g Citrus clementina HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
COL.COLO4_03801 Corchorus olitorius HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
MELO3C002819.2 Cucumis melo HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
MELO3C002822.2 Cucumis melo HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
MELO3C035497.2 Cucumis melo HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
CsaV3_1G037230 Cucumis sativus L. HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
CsaV3_1G037240 Cucumis sativus L. HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
CsaV3_1G037250 Cucumis sativus L. HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Duzib106G0606 Durio zibethinus HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Duzib177G0789 Durio zibethinus HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Gohir.A08G207600 Gossypium hirsutum HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Gohir.D08G224200 Gossypium hirsutum HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Gorai.004G238100 Gossypium raimondii HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
HanXRQChr14g0452151 Helianthus annuus HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Potri.005G021400 Populus trichocarpa HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Potri.013G011900 Populus trichocarpa HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
QL05p010646 Quercus lobata HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
QL07p047431 Quercus lobata HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Sabra05G0027400 Salix brachista HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Sabra13G0010400 Salix brachista HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Thecc.01G130800 Theobroma cacao HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Thecc.05G318700 Theobroma cacao HOM05D002608 ORTHO05D003838 1.3e-06 57.4 30 83.3
Ah.13g074140 Amaranthus hybridus HOM05D002608 ORTHO05D003838 1.8e-06 57.0 30 76.7
Gorai.007G303300 Gossypium raimondii HOM05D002608 ORTHO05D003838 1.8e-06 57.0 30 80.0
SMO358G0707 Selaginella moellendorffii HOM05D002608 ORTHO05D003838 1.8e-06 57.0 30 86.7
Sc02g0009020 Simmondsia chinensis HOM05D002608 ORTHO05D003838 1.8e-06 57.0 30 80.0
TPR.G7841 Trifolium pratense HOM05D002608 ORTHO05D003838 1.8e-06 57.0 29 86.2
FvH4_6g07021 Fragaria vesca HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
FAN02G0527 Fragaria x ananassa HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
FAN05G0606 Fragaria x ananassa HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
FAN14G0019 Fragaria x ananassa HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
HanXRQChr09g0247981 Helianthus annuus HOM05D002608 ORTHO05D003838 2.3e-06 56.6 48 62.5
MD12G1209700 Malus domestica HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
Prupe.6G317100 Prunus persica HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.3e-06 56.6 30 83.3
RcHm_v2.0_Chr3g0456551 Rosa chinensis HOM05D002608 ORTHO05D003838 2.3e-06 56.6 30 83.3
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 2.3e-06 56.6 30 83.3
CiPaw.09G189400 Carya illinoinensis HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
Ca_08783_v3 Cicer arietinum L. HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 86.7
ClCG03G017600 Citrullus lanatus HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
Lalb_Chr01g0019231 Lupinus albus HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
Mapoly0080s0038 Marchantia polymorpha HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
Pp3c26_11290 Physcomitrium patens HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
Pp3c3_10600 Physcomitrium patens HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
Pp3c4_26450 Physcomitrium patens HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 80.0
TAR365G0313 Trochodendron aralioides HOM05D002608 ORTHO05D003838 3.0e-06 56.2 30 83.3
CBR_g29275 Chara braunii HOM05D002608 ORTHO05D003838 3.9e-06 55.8 30 80.0
AUR62005245 Chenopodium quinoa HOM05D002608 ORTHO05D003838 5.1e-06 55.5 30 76.7
Gohir.A11G268500 Gossypium hirsutum HOM05D002608 ORTHO05D003838 5.1e-06 55.5 29 82.8
Gohir.D11G278500 Gossypium hirsutum HOM05D002608 ORTHO05D003838 5.1e-06 55.5 29 82.8
Gorai.007G300600 Gossypium raimondii HOM05D002608 ORTHO05D003838 5.1e-06 55.5 29 82.8
Atru.chr2.118 Acer truncatum HOM05D002608 ORTHO05D003838 6.7e-06 55.1 30 76.7
Aa31LG6G6570 Aethionema arabicum HOM05D002608 ORTHO05D003838 6.7e-06 55.1 30 76.7
Aa31LG9G10810 Aethionema arabicum HOM05D002608 ORTHO05D003838 6.7e-06 55.1 30 76.7
CARHR255150 Cardamine hirsuta HOM05D002608 ORTHO05D003838 6.7e-06 55.1 30 73.3
MCO15G442 Micromonas commoda HOM05D002608 ORTHO05D003838 6.7e-06 55.1 30 76.7
THA.LOC104814584 Tarenaya hassleriana HOM05D002608 ORTHO05D003838 6.7e-06 55.1 30 76.7
Thhalv10026980m.g Eutrema salsugineum HOM05D002608 ORTHO05D003838 8.7e-06 54.7 30 76.7


User provided reference genes

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