Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 1.0e-274 949.5 494 100.0
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 1.9e-100 370.5 549 48.5
Migut.H01709 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.7e-83 314.3 508 45.5
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 1.0e-80 305.1 545 42.4
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 3.2e-71 273.5 498 46.4
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 5.2e-69 266.2 568 38.0
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.3e-68 263.5 600 37.0
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 5.3e-66 256.1 467 43.5
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.9e-65 252.7 611 36.2
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 1.0e-64 251.9 541 39.7
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.3e-64 251.5 541 37.9
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.0e-64 249.6 540 37.8
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 4.7e-62 243.0 586 37.2
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 6.8e-61 239.2 578 35.8
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.5e-60 238.0 605 36.9
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 1.5e-60 238.0 581 37.0
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 2.6e-60 237.3 616 37.2
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 7.5e-60 235.7 580 36.9
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 2.4e-58 230.7 602 36.5
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 5.4e-58 229.6 542 38.6
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 9.1e-58 228.8 561 35.3
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 3.5e-57 226.9 546 35.9
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 2.3e-56 224.2 604 34.8
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 3.8e-56 223.4 581 34.3
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 2.5e-55 220.7 539 37.7
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.3e-55 220.3 539 37.7
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.6e-54 218.0 594 36.0
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 5.2e-53 213.0 566 35.5
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.5e-52 211.5 514 37.0
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 3.4e-52 210.3 524 36.8
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.7e-52 209.5 619 34.9
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 1.7e-51 208.0 598 35.3
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 6.3e-51 206.1 541 35.7
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 2.4e-50 204.1 546 34.6
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 4.5e-49 199.9 545 35.2
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 5.9e-49 199.5 577 35.4
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 2.3e-48 197.6 600 33.3
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 3.9e-48 196.8 622 32.8
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 3.9e-48 196.8 586 33.6
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 5.0e-48 196.4 554 33.9
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 2.5e-47 194.1 602 32.4
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 1.6e-46 191.4 601 32.8
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.6e-46 190.3 552 35.1
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 8.0e-46 189.1 559 32.7
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 8.0e-46 189.1 539 33.0
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.3e-45 187.6 559 32.6
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.9e-45 185.7 559 33.1
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 7.5e-44 182.6 572 31.1
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 7.5e-44 182.6 527 34.5
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.3e-43 181.8 550 31.3
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.3e-43 181.8 550 31.3
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 1.3e-43 181.8 596 33.4
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 1.7e-43 181.4 550 31.3
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 1.7e-43 181.4 590 33.4
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 2.9e-43 180.6 606 32.2
SGA_v2.0_scaffold92G28165 Striga asiatica HOM05D003079 ORTHO05D003461 8.3e-43 179.1 93 96.8
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 1.4e-42 178.3 620 31.1
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.4e-42 176.4 603 32.7
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 7.0e-42 176.0 547 31.8
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 1.0e-40 172.2 600 31.2
Oeu062673.1 Olea europaea HOM05D003079 ORTHO05D003461 1.7e-40 171.4 330 40.6
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 5.0e-40 169.9 544 33.8
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 5.0e-40 169.9 567 31.9
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 5.0e-40 169.9 608 32.1
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 6.6e-40 169.5 522 33.1
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 8.6e-40 169.1 584 31.5
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.1e-39 168.7 557 32.9
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.1e-39 168.7 440 35.0
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 1.9e-39 167.9 613 31.5
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 3.3e-39 167.2 618 30.1
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 4.3e-39 166.8 547 31.6
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 4.3e-39 166.8 516 31.4
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 7.3e-39 166.0 557 31.6
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 1.2e-38 165.2 507 33.9
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 2.8e-38 164.1 572 32.7
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.8e-38 164.1 439 33.9
Actinidia30350 Actinidia chinensis HOM05D003079 ORTHO05D003461 3.6e-38 163.7 372 39.2
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.6e-38 163.7 553 30.0
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 6.2e-38 162.9 572 32.5
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 4.0e-37 160.2 600 31.8
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 4.0e-37 160.2 569 33.6
MSTRG.14525 Avicennia marina HOM05D003079 ORTHO05D003461 6.8e-37 159.5 258 42.6
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 6.8e-37 159.5 587 30.0
SGA_v2.0_scaffold7G03549 Striga asiatica HOM05D003079 ORTHO05D003461 2.0e-36 157.9 285 41.1
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 4.4e-36 156.8 598 30.8
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 5.8e-36 156.4 586 28.8
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.3e-35 155.2 599 29.2
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 2.2e-35 154.5 601 31.8
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 6.4e-35 152.9 460 32.8
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 1.9e-34 151.4 587 32.4
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.4e-34 151.0 579 31.4
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 4.1e-34 150.2 294 40.1
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 9.2e-34 149.1 582 30.6
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 4.6e-33 146.7 582 30.4
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 7.8e-33 146.0 565 30.6
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 1.0e-32 145.6 716 27.2
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.7e-32 144.8 583 30.7
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 3.9e-32 143.7 584 31.8
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 5.1e-32 143.3 567 30.5
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 1.5e-31 141.7 528 31.6
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 1.9e-31 141.4 596 30.9
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 5.6e-31 139.8 585 30.8
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 9.5e-31 139.0 551 29.6
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 9.5e-31 139.0 542 29.5
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 2.8e-30 137.5 581 31.0
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 2.8e-30 137.5 520 30.8
unitig_744.g24499 Utricularia gibba HOM05D003079 ORTHO05D003461 2.8e-30 137.5 484 32.4
COL.COLO4_07791 Corchorus olitorius HOM05D003079 ORTHO05D003461 4.7e-30 136.7 288 40.3
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 2.0e-28 131.3 500 31.4
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 2.0e-28 131.3 303 38.3
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 9.9e-28 129.0 546 28.6
TAR626G0479 Trochodendron aralioides HOM05D003079 ORTHO05D003461 9.9e-28 129.0 419 33.4
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 4.1e-26 123.6 477 30.2
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 1.2e-25 122.1 544 30.1
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 2.1e-25 121.3 477 29.8
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.6e-25 120.2 555 29.5
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.0e-24 119.0 542 29.2
Lsat_1_v5_gn_7_115521 Lactuca sativa HOM05D003079 ORTHO05D003461 1.7e-24 118.2 438 34.7
Oeu006261.2 Olea europaea HOM05D003079 ORTHO05D003461 2.3e-24 117.9 182 46.2
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 2.3e-24 117.9 313 35.5
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 3.0e-24 117.5 596 29.0
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 6.6e-24 116.3 567 28.4
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 8.6e-24 115.9 507 29.0
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.1e-23 115.5 544 28.3
C01p22370 Brassica napus HOM05D003079 ORTHO05D003461 1.5e-23 115.2 506 27.7
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 1.5e-23 115.2 574 26.3
HanXRQChr11g0335521 Helianthus annuus HOM05D003079 ORTHO05D003461 1.9e-23 114.8 485 30.7
BcaC09g50710 Brassica carinata HOM05D003079 ORTHO05D003461 1.2e-22 112.1 472 27.8
BolC1t02168H Brassica oleracea HOM05D003079 ORTHO05D003461 1.2e-22 112.1 472 27.8
AL3G25210 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 4.7e-22 110.2 522 29.5
BcaNung02417 Brassica carinata HOM05D003079 ORTHO05D003461 4.7e-22 110.2 548 26.8
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.8e-21 108.2 552 28.6
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 1.7e-19 101.7 572 27.8
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 1.7e-19 101.7 476 27.3
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 4.9e-19 100.1 579 29.0
Thhalv10020643m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 6.4e-19 99.8 468 28.8
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 1.4e-18 98.6 501 27.1
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 1.9e-18 98.2 536 28.4
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 4.2e-18 97.1 566 26.3
THA.LOC104815679 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 5.4e-18 96.7 424 29.7
Sp3g11560 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.2e-17 95.5 480 28.3
ECA236G4881 Erigeron canadensis HOM05D003079 ORTHO05D003461 3.5e-17 94.0 480 29.6
BcaC01g03997 Brassica carinata HOM05D003079 ORTHO05D003461 1.0e-16 92.4 503 29.6
BolC3t16901H Brassica oleracea HOM05D003079 ORTHO05D003461 1.7e-16 91.7 495 28.1
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 1.7e-16 91.7 144 44.4
BcaB04g21010 Brassica carinata HOM05D003079 ORTHO05D003461 2.3e-16 91.3 502 27.3
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 3.9e-16 90.5 526 26.4
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 1.1e-15 89.0 541 24.2
A03p38160 Brassica napus HOM05D003079 ORTHO05D003461 1.5e-15 88.6 504 29.4
BraA03t12969Z Brassica rapa HOM05D003079 ORTHO05D003461 1.5e-15 88.6 504 29.4
Zm00001eb316300 Zea mays HOM05D003079 ORTHO05D003461 1.5e-15 88.6 537 27.2
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.6e-14 85.1 132 46.2
Aa31LG8G580 Aethionema arabicum HOM05D003079 ORTHO05D003461 2.1e-14 84.7 518 26.3
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 2.8e-14 84.3 245 37.1
A01p40240 Brassica napus HOM05D003079 ORTHO05D003461 6.2e-14 83.2 489 26.4
C03p46320 Brassica napus HOM05D003079 ORTHO05D003461 8.1e-14 82.8 490 28.6
BraA01t04061Z Brassica rapa HOM05D003079 ORTHO05D003461 8.1e-14 82.8 489 26.4
AT3G13360 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 1.4e-13 82.0 398 31.2
unitig_21.g20258 Utricularia gibba HOM05D003079 ORTHO05D003461 2.4e-13 81.3 268 32.1
BolC1t05117H Brassica oleracea HOM05D003079 ORTHO05D003461 1.5e-12 78.6 464 28.4
BcaC09g48303 Brassica carinata HOM05D003079 ORTHO05D003461 2.6e-12 77.8 464 28.2
THA.LOC104810573 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 7.6e-12 76.3 340 27.9
C01p51720 Brassica napus HOM05D003079 ORTHO05D003461 9.9e-12 75.9 464 28.4
CARHR087980 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.3e-11 75.5 468 27.6
BcaB04g18754 Brassica carinata HOM05D003079 ORTHO05D003461 1.7e-11 75.1 470 26.2
Carub.0003s1274 Capsella rubella HOM05D003079 ORTHO05D003461 2.2e-11 74.7 520 25.8
ECA240G3294 Erigeron canadensis HOM05D003079 ORTHO05D003461 1.4e-10 72.0 197 33.0
ATR0751G003 Amborella trichopoda HOM05D003079 ORTHO05D003461 3.2e-10 70.9 373 30.8
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 7.1e-10 69.7 151 35.1
ATR0751G103 Amborella trichopoda HOM05D003079 ORTHO05D003461 2.7e-09 67.8 134 35.8
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.7e-09 67.8 273 28.9
CDE02G1968 Ceratophyllum demersum HOM05D000308 ORTHO05D003461 4.6e-09 67.0 428 25.7
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.3e-08 65.5 130 39.2
Ca_09552_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 5.1e-08 63.5 160 34.4
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 8.7e-08 62.8 276 27.5
HanXRQChr03g0079381 Helianthus annuus HOM05D003079 ORTHO05D003461 1.1e-07 62.4 258 28.3
Haze_07774 Corylus avellana HOM05D003079 ORTHO05D003461 1.5e-07 62.0 83 48.2
PGSC0003DMG400029886 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.5e-07 62.0 74 41.9
Ca_06048_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 1.9e-07 61.6 115 37.4
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 3.3e-07 60.8 552 23.9
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.3e-07 60.8 471 26.1
Haze_20425 Corylus avellana HOM05D003079 ORTHO05D003461 4.3e-07 60.5 77 49.4
Lsat_1_v5_gn_9_88621 Lactuca sativa HOM05D003079 ORTHO05D003461 9.6e-07 59.3 507 26.0
HanXRQChr05g0160341 Helianthus annuus HOM05D003079 ORTHO05D003461 1.3e-06 58.9 189 30.2
Os08g0497900 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 1.6e-06 58.5 480 22.9
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 2.1e-06 58.2 130 27.7


User provided reference genes

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