Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.3e-131 473.0 237 100.0
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.2e-76 290.4 254 63.0
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 4.8e-73 278.5 256 60.9
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 7.5e-66 254.6 255 58.8
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.0e-62 244.2 239 56.5
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 6.5e-62 241.5 252 55.2
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 2.6e-58 229.6 243 51.4
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 7.5e-58 228.0 247 51.8
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 3.7e-57 225.7 243 52.3
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 3.1e-56 222.6 225 53.8
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 3.5e-55 219.2 224 52.7
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 4.5e-55 218.8 249 50.2
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 4.5e-55 218.8 242 52.1
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 7.7e-55 218.0 225 52.4
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.0e-54 217.6 240 50.4
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.0e-54 217.6 252 53.2
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.0e-54 217.6 225 54.7
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.7e-54 216.9 232 52.6
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 2.9e-54 216.1 241 49.8
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 2.9e-54 216.1 245 50.2
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 6.6e-54 214.9 240 53.3
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.5e-53 213.8 225 52.0
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.9e-53 213.4 225 51.6
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 1.9e-53 213.4 224 51.3
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 2.5e-53 213.0 257 49.8
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.5e-53 213.0 235 51.9
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 3.3e-53 212.6 242 51.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 4.2e-53 212.2 225 52.0
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 5.5e-53 211.8 251 50.2
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 5.5e-53 211.8 249 50.6
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 5.5e-53 211.8 250 50.4
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.2e-53 211.5 225 51.1
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 7.2e-53 211.5 225 51.1
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.2e-52 210.7 225 52.9
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.6e-52 210.3 231 52.8
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 3.6e-52 209.1 227 51.5
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 3.6e-52 209.1 240 49.2
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 4.7e-52 208.8 243 49.8
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 4.7e-52 208.8 242 47.9
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 6.1e-52 208.4 225 52.0
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.0e-51 207.6 228 53.5
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.4e-51 207.2 225 49.8
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.4e-51 207.2 225 49.8
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 1.4e-51 207.2 225 49.8
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.8e-51 206.8 242 48.3
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.8e-51 206.8 242 50.4
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.0e-51 206.1 250 46.8
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 4.0e-51 205.7 251 49.4
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 5.2e-51 205.3 225 52.9
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 8.9e-51 204.5 248 47.6
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.2e-50 204.1 224 50.9
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.2e-50 204.1 233 51.1
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 2.0e-50 203.4 246 48.8
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.6e-50 203.0 225 51.6
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.6e-50 203.0 225 51.6
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 3.4e-50 202.6 248 49.2
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.4e-50 202.6 235 49.4
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.4e-50 202.2 227 51.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 4.4e-50 202.2 245 48.2
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 4.4e-50 202.2 257 47.9
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 7.5e-50 201.4 242 50.0
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 9.8e-50 201.1 225 53.3
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 9.8e-50 201.1 227 51.1
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 9.8e-50 201.1 257 48.6
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.3e-49 200.7 233 48.9
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.7e-49 200.3 223 50.7
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.8e-49 199.5 229 49.8
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 2.8e-49 199.5 227 52.4
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 2.8e-49 199.5 229 50.7
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 4.9e-49 198.7 258 48.8
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 4.9e-49 198.7 223 49.3
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 4.9e-49 198.7 257 47.1
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 6.3e-49 198.4 243 48.1
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.3e-49 198.4 255 47.1
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.1e-48 197.6 221 47.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 1.1e-48 197.6 236 46.6
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.4e-48 197.2 237 46.0
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.8e-48 196.8 223 50.2
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.8e-48 196.8 223 50.2
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 3.2e-48 196.1 236 48.3
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 4.1e-48 195.7 223 49.8
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 4.1e-48 195.7 223 49.8
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 4.1e-48 195.7 223 50.2
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 4.1e-48 195.7 223 49.8
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 4.1e-48 195.7 223 49.8
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 4.1e-48 195.7 232 47.0
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.4e-48 195.3 255 46.7
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 7.0e-48 194.9 225 49.3
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.2e-47 194.1 223 48.4
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.2e-47 194.1 223 49.3
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 2.0e-47 193.4 226 50.9
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 3.5e-47 192.6 228 45.2
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 5.9e-47 191.8 246 46.7
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 7.8e-47 191.4 223 48.4
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 7.8e-47 191.4 267 44.6
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.0e-46 191.0 224 48.2
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.3e-46 190.7 223 49.8
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.3e-46 190.7 228 49.6
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.3e-46 189.9 230 47.4
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 3.9e-46 189.1 229 48.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 8.6e-46 188.0 224 47.8
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 8.6e-46 188.0 202 53.5
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 2.5e-45 186.4 224 47.3
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 4.3e-45 185.7 227 48.5
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 1.2e-44 184.1 226 47.3
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 2.0e-42 176.8 216 46.8
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 5.8e-42 175.3 219 46.6
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 2.2e-41 173.3 215 46.5
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 2.9e-41 172.9 257 43.6
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 4.9e-41 172.2 229 45.0
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 6.4e-41 171.8 220 46.4
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.9e-40 170.2 200 48.0
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.4e-40 169.9 200 47.5
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 4.6e-39 165.6 230 46.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 9.8e-34 147.9 129 59.7
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.3e-33 147.5 231 41.6
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.2e-33 146.7 168 50.0
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 6.4e-33 145.2 225 40.9
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 6.0e-31 138.7 209 41.1
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 4.3e-29 132.5 220 39.1
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.0e-27 125.9 180 45.0
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.5e-26 124.0 177 44.6
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 7.6e-26 121.7 180 44.4
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.7e-25 120.6 214 37.4
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.7e-25 119.4 134 48.5
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-24 117.9 137 49.6
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 4.1e-24 115.9 155 43.9
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 3.0e-22 109.8 216 33.8
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 8.6e-22 108.2 201 35.8
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.9e-21 107.1 177 41.8
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.2e-20 104.4 231 32.0
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.1e-20 103.6 149 45.6
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.4e-19 100.1 228 30.3
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.1e-19 99.8 231 31.2
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 6.8e-19 98.6 234 32.9
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 8.9e-19 98.2 143 42.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.8e-11 73.9 76 50.0
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 9.3e-08 61.6 69 52.2
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 7.9e-07 58.5 165 30.3


User provided reference genes

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