Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 6.1e-174 614.0 298 100.0
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 6.4e-131 471.1 286 82.9
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 4.6e-129 464.9 255 88.6
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 2.1e-126 456.1 294 79.9
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 2.3e-120 436.0 253 83.4
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 8.9e-117 424.1 245 83.7
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 3.4e-116 422.2 268 76.5
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.5e-111 406.8 235 83.0
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.9e-111 406.4 266 74.8
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 2.5e-111 406.0 235 81.7
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 2.5e-111 406.0 235 82.6
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 3.3e-111 405.6 235 81.3
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.1e-110 402.9 241 80.1
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 1.2e-108 397.1 233 80.3
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 7.6e-108 394.4 269 73.6
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 7.6e-108 394.4 279 68.8
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 9.9e-108 394.0 262 74.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 3.8e-107 392.1 304 68.8
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 4.2e-106 388.7 272 70.6
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 5.4e-106 388.3 259 72.6
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 7.1e-106 387.9 287 68.3
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 2.1e-105 386.3 278 70.1
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 3.5e-105 385.6 262 72.1
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 4.6e-105 385.2 233 77.7
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 6.0e-105 384.8 279 69.2
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.3e-104 383.6 235 79.6
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 1.3e-104 383.6 279 69.2
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.7e-104 383.3 236 76.3
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 2.3e-104 382.9 272 69.9
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 2.5e-103 379.4 237 75.5
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 3.3e-103 379.0 278 69.8
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 4.3e-103 378.6 256 72.3
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 5.6e-103 378.3 233 80.3
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 7.4e-103 377.9 233 77.7
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 9.6e-103 377.5 233 78.1
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 9.6e-103 377.5 296 66.6
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.3e-102 377.1 253 73.9
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 1.3e-102 377.1 233 77.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 1.6e-102 376.7 306 65.0
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 3.6e-102 375.6 276 67.8
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 3.6e-102 375.6 233 76.0
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 4.8e-102 375.2 233 78.5
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 6.2e-102 374.8 287 66.9
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 6.2e-102 374.8 266 69.2
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 8.1e-102 374.4 292 67.1
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 1.4e-101 373.6 233 75.5
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.4e-101 373.6 276 67.4
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.4e-101 373.6 280 66.8
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 1.4e-101 373.6 233 76.8
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.8e-101 373.2 267 69.3
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 3.1e-101 372.5 290 64.8
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 5.3e-101 371.7 293 65.2
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 5.3e-101 371.7 233 76.4
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 9.0e-101 370.9 236 76.7
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.2e-100 370.5 292 65.4
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 2.6e-100 369.4 300 64.3
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.6e-100 369.4 234 75.2
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 3.4e-100 369.0 233 75.1
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 3.4e-100 369.0 293 65.9
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 3.4e-100 369.0 276 67.0
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 9.9e-100 367.5 279 66.3
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.7e-99 366.7 286 65.7
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.7e-99 366.7 263 70.3
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.7e-99 366.7 233 74.7
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 2.2e-99 366.3 235 73.2
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 2.2e-99 366.3 293 64.5
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 4.9e-99 365.2 268 67.2
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 8.4e-99 364.4 233 76.0
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 2.4e-98 362.8 268 68.3
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 2.4e-98 362.8 304 62.2
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 2.4e-98 362.8 268 67.2
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 4.2e-98 362.1 235 76.2
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 5.5e-98 361.7 264 68.9
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.2e-97 360.5 235 72.3
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 3.5e-97 359.0 233 76.8
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 6.0e-97 358.2 268 66.4
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 7.9e-97 357.8 268 68.7
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.3e-96 357.1 238 71.0
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 1.8e-96 356.7 284 64.4
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.3e-96 356.3 238 70.2
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 3.0e-96 355.9 293 63.1
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 5.1e-96 355.1 283 65.7
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 1.1e-95 354.0 266 65.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 1.9e-95 353.2 235 71.5
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 4.3e-95 352.1 298 63.8
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.8e-94 348.6 238 69.7
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 6.2e-94 348.2 248 68.5
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 8.1e-94 347.8 289 61.9
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 2.4e-93 346.3 235 71.1
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.5e-92 342.0 238 67.6
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 4.9e-91 338.6 251 65.7
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-88 329.3 233 64.8
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-88 329.3 233 64.4
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.5e-87 326.2 233 65.7
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 7.6e-84 314.7 234 61.5
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 1.3e-83 313.9 286 55.9
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 2.9e-83 312.8 232 62.1
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 3.2e-82 309.3 240 60.0
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 5.5e-82 308.5 234 64.5
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.1e-81 306.6 240 60.0
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.7e-81 306.2 296 58.4
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 6.1e-81 305.1 219 62.6
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 1.0e-80 304.3 219 63.9
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.8e-80 303.5 262 57.3
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 3.9e-80 302.4 242 61.6
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 6.7e-80 301.6 219 62.1
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.1e-79 300.8 233 63.1
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 3.3e-79 299.3 249 63.1
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.8e-77 293.5 223 68.2
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.4e-77 293.1 228 60.1
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 3.1e-77 292.7 242 61.6
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 5.3e-77 292.0 282 55.7
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 1.2e-76 290.8 218 60.1
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 9.4e-74 281.2 266 56.8
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.8e-69 266.9 238 56.3
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 1.5e-68 263.8 231 60.6
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 1.5e-68 263.8 214 60.7
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 3.9e-64 249.2 238 56.7
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 3.3e-63 246.1 249 55.4
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 4.4e-63 245.7 184 59.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 3.7e-62 242.7 286 45.1
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 1.4e-61 240.7 162 69.1
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 5.9e-60 235.3 283 51.2
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 2.2e-59 233.4 167 71.3
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.2e-54 216.9 231 52.4
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 6.3e-54 215.3 145 69.7
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.2e-52 211.1 196 56.1
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 2.0e-52 210.3 164 63.4
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.5e-47 194.1 290 40.0
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 6.3e-46 188.7 139 71.2
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 1.9e-42 177.2 291 40.2
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 4.7e-41 172.6 120 61.7
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.7e-35 154.1 271 41.7
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 3.8e-35 152.9 115 61.7
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-33 147.9 104 68.3
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 4.4e-31 139.4 101 64.4
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.8e-29 134.0 144 53.5
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.2e-28 131.3 119 54.6
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 2.5e-26 123.6 72 77.8
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 5.0e-19 99.4 58 79.3
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.5e-15 87.8 86 57.0
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.5e-15 87.8 94 47.9
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.9e-13 80.9 53 71.7
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 7.1e-13 79.0 74 50.0
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 1.6e-09 67.8 57 52.6


User provided reference genes

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