Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 1.2e-138 496.5 251 100.0
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 3.5e-114 415.2 257 82.5
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 3.3e-112 408.7 257 82.5
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 5.8e-109 397.9 235 84.7
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.9e-107 392.9 222 87.8
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 4.6e-106 388.3 222 86.0
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 7.8e-106 387.5 239 80.8
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.3e-105 386.0 221 86.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.0e-105 385.6 221 86.9
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 6.6e-105 384.4 222 86.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 1.1e-104 383.6 222 86.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.5e-104 382.5 242 80.6
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.3e-104 382.1 222 85.6
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 5.6e-104 381.3 222 84.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 5.6e-104 381.3 224 83.0
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 7.3e-104 380.9 222 85.1
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.2e-103 380.2 223 85.7
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.2e-103 380.2 224 84.8
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 1.6e-103 379.8 270 73.7
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.6e-103 379.8 223 84.3
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 4.7e-103 378.3 213 87.3
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 4.7e-103 378.3 237 80.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 6.2e-103 377.9 220 83.6
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 6.2e-103 377.9 220 85.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.1e-102 377.1 220 84.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.8e-102 376.3 222 83.3
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 2.4e-102 375.9 218 84.4
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.4e-102 375.9 222 83.3
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.4e-102 375.9 222 83.3
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.4e-102 375.9 234 81.2
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.4e-102 375.9 222 85.1
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.1e-102 375.6 242 79.8
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 4.0e-102 375.2 213 85.9
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 5.2e-102 374.8 217 85.7
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 8.9e-102 374.0 216 85.2
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.5e-101 373.2 257 75.5
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 2.0e-101 372.9 222 82.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 2.0e-101 372.9 222 85.6
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.8e-100 368.6 218 83.9
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.4e-99 366.7 217 81.6
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.4e-99 366.7 215 81.9
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.9e-99 366.3 213 84.0
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 3.2e-99 365.5 218 81.2
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.2e-99 365.5 214 84.1
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 4.2e-99 365.2 222 82.4
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 7.1e-99 364.4 217 82.0
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 7.1e-99 364.4 214 85.0
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.2e-98 363.6 213 83.1
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.6e-98 363.2 217 81.6
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-97 360.1 213 81.7
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 6.6e-97 357.8 214 83.2
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 2.5e-96 355.9 222 80.2
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.3e-96 355.5 220 80.0
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.3e-96 355.5 217 82.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.3e-96 355.5 214 80.4
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 4.3e-96 355.1 220 78.6
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 5.6e-96 354.8 214 83.2
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 9.6e-96 354.0 220 77.7
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 9.6e-96 354.0 220 77.7
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.6e-96 354.0 220 79.1
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.3e-95 353.6 214 82.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.1e-95 352.8 220 78.6
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 3.6e-95 352.1 220 78.2
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.6e-95 352.1 214 82.2
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 4.8e-95 351.7 215 78.6
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 4.8e-95 351.7 231 76.6
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 6.2e-95 351.3 220 78.2
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 6.2e-95 351.3 214 80.8
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.1e-94 350.5 220 78.2
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-94 349.7 215 78.1
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 9.0e-94 347.4 233 75.1
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.5e-93 346.7 220 78.6
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 2.2e-92 342.8 226 77.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 2.9e-92 342.4 219 76.3
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 6.4e-92 341.3 217 77.0
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.4e-91 340.1 217 75.6
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.9e-91 339.7 214 78.5
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 3.2e-91 339.0 214 78.0
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 4.2e-91 338.6 217 76.5
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.2e-91 338.6 214 78.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 7.1e-91 337.8 219 76.7
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 7.1e-91 337.8 219 76.7
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 2.1e-90 336.3 227 72.7
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.0e-89 334.0 220 74.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.3e-89 332.8 220 75.5
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 3.9e-89 332.0 210 74.3
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 5.1e-89 331.6 218 75.2
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 8.7e-89 330.9 270 64.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 4.3e-88 328.6 220 73.6
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 5.6e-88 328.2 222 76.6
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.3e-87 327.0 220 72.7
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.1e-87 326.2 220 72.7
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.8e-87 325.9 214 75.7
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.6e-87 325.5 220 73.6
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.1e-86 323.9 222 73.0
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-86 323.6 220 72.3
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.4e-86 323.6 220 72.3
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 1.4e-86 323.6 220 72.3
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 3.1e-86 322.4 220 71.8
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 9.0e-86 320.9 222 71.2
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 9.0e-86 320.9 220 72.7
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 9.0e-86 320.9 220 72.7
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.6e-85 319.3 222 70.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 4.5e-85 318.5 184 85.9
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.2e-82 310.5 219 73.5
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.6e-82 308.5 215 68.8
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.7e-81 304.7 210 69.5
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.5e-80 302.8 211 67.8
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 3.3e-80 302.4 210 68.6
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.4e-78 297.0 212 68.4
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.8e-78 296.6 222 66.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.2e-77 293.9 215 64.2
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 2.6e-77 292.7 212 67.5
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 3.4e-77 292.4 176 80.1
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.7e-73 277.7 180 72.2
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 5.5e-67 258.5 199 64.8
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.8e-63 245.4 141 83.7
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 3.3e-56 222.6 132 84.8
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 7.4e-56 221.5 133 83.5
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.8e-55 219.5 224 51.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 1.2e-53 214.2 128 81.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.0e-52 208.8 122 82.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.7e-50 203.0 122 80.3
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 7.4e-48 194.9 148 68.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.1e-43 181.0 124 69.4
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 7.5e-40 168.3 110 76.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-39 167.5 92 91.3
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.8e-39 166.4 112 72.3
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.1e-38 164.5 95 86.3
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 7.0e-38 161.8 126 67.5
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.7e-32 142.1 90 76.7
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 9.8e-32 141.4 202 41.6
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.7e-31 140.6 164 43.9
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.1e-30 136.3 88 71.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.7e-28 130.6 94 70.2
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.2e-28 130.2 189 38.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 8.5e-28 128.3 75 80.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.9e-27 127.1 219 36.1
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 4.2e-27 125.9 189 37.6
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 5.5e-27 125.6 202 40.1
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.2e-26 124.4 203 36.5
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 8.8e-25 118.2 73 79.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 3.4e-24 116.3 71 74.6
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 4.9e-23 112.5 195 36.9
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 8.3e-23 111.7 216 34.3
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 4.1e-22 109.4 88 62.5
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 5.9e-21 105.5 230 32.6
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 7.7e-21 105.1 75 69.3
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.3e-20 104.4 83 67.5
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 2.5e-19 100.1 60 80.0
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 3.3e-19 99.8 63 77.8
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.2e-18 97.8 170 32.9
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.6e-18 97.4 58 81.0
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.6e-18 96.3 61 73.8
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.4e-17 94.4 95 55.8
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 4.0e-17 92.8 68 66.2
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 1.7e-15 87.4 68 63.2
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 2.9e-15 86.7 59 72.9
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 2.7e-13 80.1 44 81.8
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 3.9e-12 76.3 68 57.4
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 8.6e-12 75.1 64 59.4
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.5e-11 74.3 94 51.1
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 1.5e-11 74.3 66 59.1
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.9e-11 73.9 120 40.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 2.5e-11 73.6 57 66.7
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 2.5e-11 73.6 59 62.7
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 9.5e-11 71.6 57 63.2
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.4e-09 67.8 39 82.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.4e-08 63.2 113 40.7


User provided reference genes

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