Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold91G28002 Striga asiatica HOM05D002454 ORTHO05D002581 6.7e-54 213.8 108 100.0
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 1.8e-11 72.8 46 80.4
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 3.1e-11 72.0 53 71.7
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 4.1e-11 71.6 37 97.3
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 5.3e-11 71.2 44 86.4
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.0e-11 70.9 37 94.6
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.0e-11 70.9 37 94.6
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 9.1e-11 70.5 36 100.0
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 1.2e-10 70.1 39 89.7
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 1.2e-10 70.1 36 97.2
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 1.6e-10 69.7 36 97.2
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 2.0e-10 69.3 36 97.2
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 2.6e-10 68.9 36 97.2
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 2.6e-10 68.9 36 97.2
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 2.6e-10 68.9 36 97.2
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 2.6e-10 68.9 37 91.9
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 2.6e-10 68.9 36 97.2
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 2.6e-10 68.9 37 91.9
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 2.6e-10 68.9 36 97.2
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 3.5e-10 68.6 36 97.2
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 3.5e-10 68.6 41 87.8
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 3.5e-10 68.6 36 97.2
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 3.5e-10 68.6 49 77.6
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 3.5e-10 68.6 36 97.2
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 3.5e-10 68.6 36 97.2
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 3.5e-10 68.6 36 97.2
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.5e-10 68.2 36 94.4
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 4.5e-10 68.2 36 94.4
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 4.5e-10 68.2 35 100.0
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 4.5e-10 68.2 36 94.4
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 4.5e-10 68.2 36 94.4
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 4.5e-10 68.2 36 94.4
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 5.9e-10 67.8 36 94.4
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 5.9e-10 67.8 36 94.4
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 5.9e-10 67.8 36 94.4
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 5.9e-10 67.8 36 94.4
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 5.9e-10 67.8 36 94.4
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 5.9e-10 67.8 36 94.4
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 7.7e-10 67.4 36 94.4
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 7.7e-10 67.4 36 94.4
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 7.7e-10 67.4 36 94.4
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 7.7e-10 67.4 53 66.0
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 7.7e-10 67.4 53 66.0
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 1.0e-09 67.0 35 97.1
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 1.0e-09 67.0 35 97.1
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 1.0e-09 67.0 36 91.7
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 1.0e-09 67.0 35 97.1
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.0e-09 67.0 35 97.1
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 1.0e-09 67.0 35 94.3
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 1.0e-09 67.0 35 97.1
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 1.0e-09 67.0 36 91.7
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 1.0e-09 67.0 36 94.4
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 1.0e-09 67.0 36 94.4
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 1.3e-09 66.6 36 91.7
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.3e-09 66.6 36 91.7
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 1.3e-09 66.6 36 91.7
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 88.9
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 88.9
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 1.3e-09 66.6 52 69.2
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 1.3e-09 66.6 35 97.1
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 1.3e-09 66.6 36 91.7
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 1.7e-09 66.2 36 91.7
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 1.7e-09 66.2 36 91.7
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 1.7e-09 66.2 36 91.7
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 2.2e-09 65.9 35 94.3
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.2e-09 65.9 36 86.1
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.2e-09 65.9 36 86.1
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 2.2e-09 65.9 35 94.3
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 2.2e-09 65.9 35 94.3
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 2.2e-09 65.9 35 94.3
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 2.2e-09 65.9 37 91.9
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 2.2e-09 65.9 35 94.3
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 2.2e-09 65.9 35 94.3
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 2.9e-09 65.5 52 69.2
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 2.9e-09 65.5 53 62.3
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 2.9e-09 65.5 35 94.3
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 3.8e-09 65.1 35 94.3
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 3.8e-09 65.1 37 86.5
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 3.8e-09 65.1 36 91.7
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 3.8e-09 65.1 36 91.7
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 3.8e-09 65.1 53 62.3
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 3.8e-09 65.1 36 88.9
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 5.0e-09 64.7 36 91.7
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 5.0e-09 64.7 35 91.4
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 5.0e-09 64.7 35 94.3
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 5.0e-09 64.7 43 76.7
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 6.5e-09 64.3 35 91.4
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 6.5e-09 64.3 35 91.4
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 6.5e-09 64.3 35 91.4
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 6.5e-09 64.3 37 83.8
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 8.5e-09 63.9 35 91.4
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 8.5e-09 63.9 35 88.6
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 8.5e-09 63.9 52 65.4
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 1.1e-08 63.5 35 88.6
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 1.1e-08 63.5 36 88.9
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.1e-08 63.5 35 91.4
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.1e-08 63.5 35 91.4
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 1.1e-08 63.5 36 91.7
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 1.5e-08 63.2 37 83.8
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 1.5e-08 63.2 33 97.0
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 1.9e-08 62.8 35 91.4
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 2.5e-08 62.4 35 91.4
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 3.2e-08 62.0 35 85.7
Oeu043338.1 Olea europaea HOM05D001586 ORTHO05D001543 3.2e-08 62.0 36 86.1
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 4.2e-08 61.6 36 86.1
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 4.2e-08 61.6 39 76.9
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 5.5e-08 61.2 35 85.7
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 5.5e-08 61.2 39 76.9
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 7.2e-08 60.8 34 91.2
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 7.2e-08 60.8 39 74.4
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 9.4e-08 60.5 36 86.1
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 9.4e-08 60.5 36 86.1
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 1.2e-07 60.1 46 65.2
GSVIVG01031131001 Vitis vinifera HOM05D002454 ORTHO05D002581 1.2e-07 60.1 32 96.9
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 2.1e-07 59.3 39 76.9
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.1e-07 59.3 38 76.3
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 4.7e-07 58.2 36 83.3
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 3.0e-06 55.5 52 65.4
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 3.0e-06 55.5 52 65.4
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 3.0e-06 55.5 36 72.2
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 3.0e-06 55.5 34 79.4


User provided reference genes

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