Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 2.9e-232 808.1 398 100.0
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 7.2e-138 494.6 330 76.4
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 1.2e-132 477.2 330 75.2
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 1.1e-125 454.1 357 67.8
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 1.8e-112 410.2 332 64.2
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.8e-112 408.3 332 65.4
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 8.9e-112 407.9 333 64.0
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 1.5e-111 407.1 330 67.6
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 2.6e-111 406.4 336 64.0
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 7.5e-111 404.8 332 64.8
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 7.5e-111 404.8 335 65.4
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.3e-110 404.1 328 64.0
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.3e-110 404.1 346 65.3
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 2.2e-110 403.3 334 64.4
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 2.2e-110 403.3 335 64.8
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.8e-110 402.9 332 64.5
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 2.8e-110 402.9 346 65.3
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 3.7e-110 402.5 246 78.9
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 8.3e-110 401.4 333 64.3
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.4e-109 400.6 287 69.0
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 1.8e-109 400.2 222 84.7
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 4.1e-109 399.1 275 72.4
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 5.4e-109 398.7 318 65.7
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 9.2e-109 397.9 255 76.5
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 1.6e-108 397.1 224 84.8
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 1.6e-108 397.1 341 64.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 2.0e-108 396.7 328 64.0
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 2.0e-108 396.7 241 79.7
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.7e-108 396.4 298 69.1
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 2.7e-108 396.4 238 80.3
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.5e-108 396.0 243 76.5
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.5e-108 396.0 326 64.7
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.9e-108 395.2 329 65.3
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 5.9e-108 395.2 219 85.4
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 7.8e-108 394.8 220 84.5
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.0e-107 394.4 218 83.9
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.3e-107 394.0 222 83.3
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.3e-107 394.0 233 82.4
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.7e-107 393.7 239 78.2
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.7e-107 393.7 246 77.2
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.9e-107 392.9 332 63.3
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 3.9e-107 392.5 230 80.9
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 3.9e-107 392.5 280 69.6
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 5.0e-107 392.1 219 84.9
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.3e-106 389.0 245 75.5
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.3e-106 389.0 245 75.5
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 4.3e-106 389.0 245 75.5
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 4.3e-106 389.0 343 60.3
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 1.2e-105 387.5 334 63.2
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 1.2e-105 387.5 338 61.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 1.2e-105 387.5 332 61.4
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.6e-105 387.1 329 63.8
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 2.1e-105 386.7 339 61.9
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.1e-105 386.7 236 80.9
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.8e-105 386.3 333 63.1
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 2.8e-105 386.3 237 76.8
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 3.6e-105 386.0 244 77.5
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 4.7e-105 385.6 335 62.1
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 4.7e-105 385.6 236 77.5
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 6.1e-105 385.2 339 61.9
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 1.0e-104 384.4 339 60.8
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.0e-104 384.4 335 60.9
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 1.2e-103 380.9 271 70.5
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 1.5e-103 380.6 325 61.5
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 1.5e-103 380.6 219 83.1
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.5e-103 380.6 339 61.4
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.4e-103 379.4 339 60.5
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 4.4e-103 379.0 350 59.7
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 5.8e-103 378.6 339 60.2
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 5.8e-103 378.6 341 59.5
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 7.5e-103 378.3 332 61.7
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 9.8e-103 377.9 267 70.8
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 2.2e-102 376.7 305 64.6
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.9e-102 375.6 339 60.2
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 4.9e-102 375.6 339 60.2
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 8.3e-102 374.8 355 59.2
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 8.3e-102 374.8 243 75.7
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.1e-101 374.4 332 61.1
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 1.9e-101 373.6 330 60.9
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 1.2e-100 370.9 248 72.2
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.6e-100 370.5 334 59.9
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.7e-100 369.8 338 59.2
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 5.0e-99 365.5 334 59.9
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 6.6e-99 365.2 219 78.1
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 1.5e-98 364.0 355 57.2
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 9.5e-98 361.3 241 71.4
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 5.8e-95 352.1 246 67.9
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 9.8e-95 351.3 215 77.2
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 1.7e-94 350.5 370 55.1
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 6.4e-94 348.6 269 64.3
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 1.1e-93 347.8 256 68.0
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 1.1e-93 347.8 271 65.7
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.4e-93 345.5 333 59.8
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 1.2e-92 344.4 218 74.8
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 2.1e-92 343.6 184 89.1
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 2.7e-92 343.2 219 76.7
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 1.3e-91 340.9 330 57.6
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 2.3e-91 340.1 350 55.1
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 1.4e-88 330.9 345 57.4
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 2.3e-88 330.1 219 72.6
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 1.7e-86 323.9 298 59.7
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 2.4e-85 320.1 181 84.0
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.2e-84 317.8 259 63.7
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 3.0e-83 313.2 235 64.3
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 9.6e-82 308.1 219 65.3
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 2.1e-81 307.0 219 66.2
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 6.2e-81 305.4 301 56.8
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.8e-80 303.9 169 85.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 1.8e-80 303.9 169 85.2
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 1.2e-79 301.2 292 52.7
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 3.2e-77 293.1 184 78.8
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 3.2e-77 293.1 317 48.6
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.5e-76 289.7 317 47.9
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.6e-76 289.3 317 47.6
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 3.0e-75 286.6 261 55.6
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 5.6e-74 282.3 213 66.7
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.8e-73 280.0 378 47.6
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 6.2e-73 278.9 329 51.7
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.1e-72 278.1 317 47.0
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 1.8e-72 277.3 223 62.3
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 4.4e-71 272.7 184 75.5
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.8e-70 269.6 346 48.8
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 1.2e-68 264.6 336 50.0
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.7e-68 263.5 140 87.9
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 3.0e-67 260.0 286 53.5
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 8.7e-67 258.5 139 86.3
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 9.6e-66 255.0 194 64.4
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 8.1e-65 251.9 254 54.3
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 8.1e-65 251.9 160 76.9
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 1.4e-64 251.1 259 56.4
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 1.2e-63 248.1 144 81.2
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 2.2e-62 243.8 192 65.1
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 9.3e-61 238.4 141 82.3
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 2.1e-60 237.3 338 45.9
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 1.3e-59 234.6 222 57.2
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 3.9e-59 233.0 244 56.1
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.7e-57 226.5 236 54.2
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 3.1e-56 223.4 184 63.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.8e-51 207.6 254 50.4
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 1.1e-50 204.9 139 71.2
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 1.3e-49 201.4 191 58.6
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.8e-49 200.3 226 52.7
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.7e-49 199.9 128 70.3
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.1e-48 198.4 127 70.9
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 2.4e-48 197.2 159 63.5
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 9.0e-48 195.3 211 46.9
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 6.1e-44 182.6 98 86.7
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 1.0e-43 181.8 97 87.6
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 3.7e-41 173.3 220 45.0
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 3.7e-41 173.3 86 89.5
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 5.0e-38 162.9 82 89.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 8.5e-38 162.2 193 46.1
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 4.2e-37 159.8 144 52.1
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 7.2e-37 159.1 98 74.5
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 1.0e-35 155.2 127 61.4
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 6.7e-35 152.5 97 73.2
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.4e-32 144.8 145 57.2
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 6.9e-32 142.5 195 47.2
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 1.5e-31 141.4 145 57.2
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 3.9e-27 126.7 133 49.6
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 3.7e-25 120.2 61 85.2
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.1e-24 118.6 70 78.6
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 1.3e-22 111.7 133 42.9
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.7e-20 104.0 102 51.0
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 3.0e-19 100.5 106 50.9
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 6.7e-19 99.4 140 45.0
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.1e-18 98.6 52 88.5
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 7.5e-18 95.9 73 68.5
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 1.2e-15 88.6 98 48.0
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 2.9e-14 84.0 56 71.4
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 7.2e-13 79.3 62 61.3
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 6.1e-12 76.3 168 39.9
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 2.3e-11 74.3 119 37.8
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 4.0e-11 73.6 43 79.1
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 7.5e-10 69.3 65 49.2
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 1.3e-09 68.6 62 58.1
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.7e-09 68.2 156 34.6
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.1e-08 65.5 39 71.8
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 8.5e-06 55.8 247 25.9


User provided reference genes

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