Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.4e-100 369.8 201 100.0
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 9.4e-86 320.5 195 92.3
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 6.6e-63 244.6 194 72.2
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.4e-59 232.3 195 67.7
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 7.0e-57 224.6 194 68.6
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 8.3e-50 201.1 181 65.7
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 7.8e-48 194.5 175 62.9
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.5e-46 190.3 203 58.1
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 4.3e-46 188.7 196 55.1
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 5.6e-46 188.3 168 61.9
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.1e-44 184.1 176 59.7
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 4.0e-44 182.2 182 55.5
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 6.8e-44 181.4 194 57.7
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.9e-41 173.3 185 55.1
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 3.2e-41 172.6 179 55.3
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 5.4e-41 171.8 179 55.3
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 4.6e-40 168.7 176 55.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 7.8e-40 167.9 182 54.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 7.8e-40 167.9 171 55.6
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 2.3e-39 166.4 200 51.5
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.3e-39 166.4 169 55.6
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 6.6e-39 164.9 175 54.3
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 6.6e-39 164.9 200 51.0
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 5.6e-38 161.8 182 53.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 9.5e-38 161.0 200 50.5
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.6e-37 160.2 164 54.3
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.8e-37 159.5 192 50.5
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 2.8e-37 159.5 164 53.0
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 3.6e-37 159.1 164 53.7
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 3.6e-37 159.1 175 52.0
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 6.2e-37 158.3 164 53.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.4e-36 157.1 164 52.4
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.8e-36 156.8 154 55.2
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 1.8e-36 156.8 156 57.1
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.3e-36 156.4 162 53.1
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.3e-36 156.4 154 54.5
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 3.1e-36 156.0 245 43.3
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 4.0e-36 155.6 184 51.6
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 5.2e-36 155.2 175 55.4
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 8.9e-36 154.5 175 50.9
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.0e-35 153.3 172 54.7
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.6e-35 152.9 176 50.6
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 3.4e-35 152.5 108 80.6
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 4.4e-35 152.1 155 56.1
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 9.9e-35 151.0 168 50.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-34 150.6 188 52.1
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.7e-34 150.2 187 49.2
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 1.7e-34 150.2 175 51.4
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 3.7e-34 149.1 161 52.8
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 6.4e-34 148.3 174 52.3
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 6.4e-34 148.3 179 52.5
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.1e-33 147.5 171 52.0
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.9e-33 146.7 155 56.1
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.9e-33 146.7 188 51.1
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.9e-33 146.7 181 51.9
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.4e-33 146.4 181 50.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 3.2e-33 146.0 189 48.7
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 5.4e-33 145.2 182 51.1
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 5.4e-33 145.2 196 49.0
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 5.4e-33 145.2 188 50.0
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 9.2e-33 144.4 180 48.3
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 3.5e-32 142.5 196 48.5
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 4.6e-32 142.1 166 49.4
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 6.0e-32 141.7 161 50.9
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 7.8e-32 141.4 193 47.7
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-31 140.6 190 47.9
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-31 140.6 190 47.9
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.3e-31 140.6 186 45.7
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.3e-31 139.8 188 48.4
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 2.3e-31 139.8 201 46.8
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 2.3e-31 139.8 201 46.8
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.1e-31 138.7 158 51.3
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 6.6e-31 138.3 175 48.0
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 1.1e-30 137.5 195 45.6
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.5e-30 137.1 151 50.3
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 7.3e-30 134.8 150 52.7
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 7.3e-30 134.8 251 40.6
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 2.1e-29 133.3 175 46.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 2.1e-29 133.3 172 50.6
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.8e-29 132.9 153 52.9
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 2.8e-29 132.9 161 50.9
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 6.2e-29 131.7 154 51.3
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 3.1e-28 129.4 169 47.3
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.2e-27 127.5 162 46.9
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.5e-27 127.1 176 46.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 4.4e-27 125.6 195 45.6
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.7e-26 123.6 167 45.5
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 6.4e-26 121.7 138 55.8
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 8.4e-26 121.3 174 46.6
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.4e-25 120.6 195 43.1
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-25 120.6 186 43.5
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.4e-25 119.8 158 46.2
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.2e-25 119.4 179 45.8
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 4.2e-25 119.0 179 41.9
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 9.2e-25 117.9 201 42.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.1e-24 116.7 230 40.0
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.5e-24 115.9 164 42.7
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.5e-24 115.9 164 42.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 3.5e-24 115.9 123 53.7
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.6e-24 115.5 160 44.4
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.0e-23 112.8 169 42.6
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 3.9e-23 112.5 176 43.2
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 6.6e-23 111.7 197 43.7
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 6.6e-23 111.7 160 43.8
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 2.5e-22 109.8 161 44.1
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.1e-20 104.4 172 43.6
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 5.3e-20 102.1 153 41.8
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.3e-20 102.1 153 41.8
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 6.9e-20 101.7 179 39.7
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 9.0e-20 101.3 168 41.1
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 4.4e-19 99.0 153 36.6
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 7.6e-19 98.2 195 40.0
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 2.2e-18 96.7 184 37.5
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.8e-18 95.9 113 49.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 3.2e-17 92.8 179 39.7
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 5.4e-17 92.0 155 42.6
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 2.7e-16 89.7 180 36.1
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 6.0e-16 88.6 103 52.4
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 7.8e-16 88.2 169 39.1
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 1.7e-15 87.0 187 36.4
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 1.9e-14 83.6 165 38.8
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 7.3e-14 81.6 135 42.2
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.3e-13 80.9 103 51.5
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 4.8e-13 79.0 190 36.3
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 3.1e-12 76.3 68 57.4
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 2.6e-11 73.2 89 52.8
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 3.4e-11 72.8 184 33.7
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.3e-10 70.9 174 35.1
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.3e-10 70.9 174 35.1
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-10 70.9 52 69.2
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 2.9e-10 69.7 103 46.6
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 6.4e-10 68.6 125 42.4
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 8.4e-10 68.2 175 34.9
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 1.4e-09 67.4 161 32.9
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.9e-09 67.0 145 38.6
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.9e-09 67.0 145 38.6
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.9e-09 67.0 166 33.7
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.2e-08 64.3 129 36.4
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 2.3e-07 60.1 121 40.5
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 3.0e-07 59.7 103 44.7
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 1.1e-06 57.8 104 42.3
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 9.6e-06 54.7 59 45.8


User provided reference genes

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