Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 9.8e-118 426.8 211 100.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.2e-59 233.8 211 53.6
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 2.2e-53 213.0 211 49.8
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.9e-53 212.6 211 49.3
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.9e-53 211.8 202 48.5
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.3e-50 203.8 211 48.3
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.5e-49 200.3 211 46.4
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.9e-49 199.9 211 47.4
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.3e-48 197.2 212 47.2
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 8.2e-48 194.5 207 44.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.1e-47 194.1 213 44.6
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.4e-47 193.7 211 44.5
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.4e-47 193.7 211 44.5
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 6.9e-47 191.4 208 45.7
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 9.0e-47 191.0 210 45.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.2e-46 190.7 213 44.6
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.0e-46 189.9 208 45.2
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.6e-46 189.5 211 46.9
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.4e-46 189.1 211 47.4
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.4e-46 189.1 211 43.1
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.4e-46 189.1 211 43.1
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.5e-46 188.7 213 44.6
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.8e-46 188.3 209 45.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 7.6e-46 188.0 201 47.3
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.0e-45 187.6 210 43.3
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.0e-45 187.6 211 44.5
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.3e-45 187.2 208 44.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.2e-45 186.4 211 42.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.9e-45 186.0 211 44.5
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.8e-45 185.7 212 44.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.0e-45 185.3 211 43.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 5.0e-45 185.3 211 46.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.5e-45 184.9 211 45.0
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 6.5e-45 184.9 213 45.1
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 8.4e-45 184.5 210 43.3
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-44 184.1 209 44.0
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.1e-44 184.1 210 44.8
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.5e-44 183.0 209 43.5
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.2e-44 182.2 211 44.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 4.2e-44 182.2 211 43.1
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 5.5e-44 181.8 211 43.6
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 7.1e-44 181.4 210 43.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 7.1e-44 181.4 209 43.5
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.3e-44 181.0 212 42.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-43 180.6 211 43.6
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.2e-43 180.6 211 42.7
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.6e-43 180.3 209 44.0
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.6e-43 180.3 211 43.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 2.1e-43 179.9 209 42.6
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.7e-43 179.5 209 42.6
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.7e-43 179.5 211 43.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.7e-43 179.5 211 43.1
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 3.5e-43 179.1 210 42.9
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 7.9e-43 177.9 212 42.0
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 7.9e-43 177.9 209 43.1
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.9e-43 177.9 213 45.5
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.3e-42 177.2 199 45.2
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.3e-42 177.2 213 42.7
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.3e-42 177.2 210 41.4
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.8e-42 176.8 208 44.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.8e-42 176.8 209 43.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.3e-42 176.4 209 42.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 3.0e-42 176.0 210 38.6
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 3.0e-42 176.0 209 41.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 5.1e-42 175.3 214 42.5
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 6.7e-42 174.9 213 42.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 6.7e-42 174.9 210 43.3
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 6.7e-42 174.9 209 42.1
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.5e-41 173.7 207 41.5
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.5e-41 173.7 214 40.7
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.9e-41 173.3 210 41.4
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.5e-41 172.9 214 42.5
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.5e-41 172.9 214 42.5
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.3e-41 172.2 214 42.1
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 5.7e-41 171.8 211 40.8
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 7.4e-41 171.4 213 41.3
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 9.7e-41 171.0 212 40.1
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.3e-40 170.6 210 41.4
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.6e-40 170.2 213 39.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.6e-40 170.2 209 41.6
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.6e-40 170.2 211 41.2
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.6e-40 170.2 213 40.8
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.2e-40 169.9 211 39.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.8e-40 169.5 211 41.2
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 3.7e-40 169.1 210 43.3
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 4.8e-40 168.7 210 40.5
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.8e-40 168.7 213 40.8
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 6.3e-40 168.3 211 43.6
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.1e-39 167.5 213 40.4
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.1e-39 167.5 211 38.9
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.1e-39 167.5 210 40.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.1e-39 167.5 212 41.0
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.4e-39 167.2 210 37.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.8e-39 166.8 213 41.8
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.4e-39 166.4 210 38.6
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.4e-39 166.4 210 39.5
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 3.1e-39 166.0 213 40.4
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 4.1e-39 165.6 213 39.9
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.1e-39 165.6 211 38.9
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 6.9e-39 164.9 212 40.6
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.2e-38 164.1 211 38.9
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.0e-38 163.3 213 40.4
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 2.6e-38 162.9 213 40.4
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 2.6e-38 162.9 212 42.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.4e-38 162.5 209 41.1
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.4e-38 162.5 210 39.5
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 4.5e-38 162.2 212 40.1
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 7.7e-38 161.4 213 39.4
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.7e-38 161.4 210 39.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.9e-37 159.5 210 43.3
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 3.8e-37 159.1 210 39.5
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.5e-37 158.3 210 38.6
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.5e-37 158.3 186 44.6
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.5e-37 157.9 186 45.7
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 1.9e-36 156.8 213 38.0
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.2e-36 156.0 213 39.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 5.5e-36 155.2 211 37.4
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 3.0e-34 149.4 213 38.0
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.0e-34 149.4 218 39.9
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 6.7e-34 148.3 210 41.0
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.5e-33 147.1 205 41.0
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 2.5e-33 146.4 214 36.0
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 2.5e-33 146.4 214 36.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.3e-33 146.0 212 38.2
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 4.3e-33 145.6 210 39.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 7.4e-33 144.8 204 41.7
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 9.7e-33 144.4 214 36.9
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 9.7e-33 144.4 130 54.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.1e-31 139.0 209 33.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.9e-31 138.3 138 44.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.2e-30 137.5 189 37.0
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.5e-30 137.1 213 37.1
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.5e-30 137.1 213 33.8
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.6e-30 136.3 170 40.6
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.0e-29 132.1 211 34.1
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.0e-29 132.1 211 34.6
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.1e-28 131.0 201 34.3
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.4e-28 130.6 209 34.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.4e-28 130.6 129 46.5
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.7e-27 126.3 138 41.3
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 2.6e-25 119.8 181 38.7
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 6.1e-19 98.6 212 31.1
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 3.0e-18 96.3 205 31.2
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.6e-17 93.2 184 32.1
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 5.5e-12 75.5 104 32.7


User provided reference genes

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