Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27860 Striga asiatica HOM05D000001 ORTHO05D401491 1.1e-56 223.0 108 100.0
SGA_v2.0_scaffold25G10806 Striga asiatica HOM05D000001 ORTHO05D009144 4.2e-16 88.2 98 55.1
Migut.O00139 Erythranthe guttata HOM05D000001 ORTHO05D009144 2.7e-15 85.5 109 48.6
Sopen03g031500 Solanum pennellii HOM05D000001 ORTHO05D009144 2.8e-12 75.5 98 45.9
Solyc03g112420.3 Solanum lycopersicum HOM05D000001 ORTHO05D009144 3.7e-12 75.1 98 44.9
Nitab4.5_0005021g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009144 4.8e-12 74.7 105 41.9
FvH4_5g21730 Fragaria vesca HOM05D000001 ORTHO05D009144 1.1e-11 73.6 101 44.6
FAN04G2777 Fragaria x ananassa HOM05D000001 ORTHO05D009144 1.8e-11 72.8 101 43.6
Gohir.D06G123700 Gossypium hirsutum HOM05D000001 ORTHO05D009144 3.1e-11 72.0 95 44.2
Gorai.010G143900 Gossypium raimondii HOM05D000001 ORTHO05D009144 3.1e-11 72.0 95 44.2
Aqoxy5G03804 Aquilegia oxysepala HOM05D000001 ORTHO05D009144 4.1e-11 71.6 94 41.5
FAN13G2388 Fragaria x ananassa HOM05D000001 ORTHO05D009144 9.1e-11 70.5 101 42.6
Lj9P444T62 Lonicera japonica HOM05D000001 ORTHO05D009144 1.2e-10 70.1 98 44.9
SHI17198 Sapria himalayana HOM05D000001 ORTHO05D009144 1.2e-10 70.1 95 45.3
Nitab4.5_0009528g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009144 1.6e-10 69.7 95 42.1
TAR629G2020 Trochodendron aralioides HOM05D000001 ORTHO05D009144 1.6e-10 69.7 98 40.8
CAN.G338.17 Capsicum annuum HOM05D000001 ORTHO05D009144 2.0e-10 69.3 95 42.1
Peaxi162Scf00089g00151 Petunia axillaris HOM05D000001 ORTHO05D009144 2.6e-10 68.9 106 40.6
TAR629G0389 Trochodendron aralioides HOM05D000001 ORTHO05D009144 3.5e-10 68.6 98 39.8
Sc04g0001610 Simmondsia chinensis HOM05D000001 ORTHO05D009144 4.5e-10 68.2 95 41.1
Thecc.02G087500 Theobroma cacao HOM05D000001 ORTHO05D009144 5.9e-10 67.8 98 41.8
AL2G10630 Arabidopsis lyrata HOM05D000001 ORTHO05D009144 7.7e-10 67.4 99 38.4
Haze_07562 Corylus avellana HOM05D000001 ORTHO05D009144 1.0e-09 67.0 94 43.6
A09p14820 Brassica napus HOM05D000001 ORTHO05D009144 1.7e-09 66.2 91 39.6
BraA09t37128Z Brassica rapa HOM05D000001 ORTHO05D009144 1.7e-09 66.2 91 39.6
Duzib235G0463 Durio zibethinus HOM05D000001 ORTHO05D009144 1.7e-09 66.2 94 40.4
Rhsim12G0166900 Rhododendron simsii HOM05D000001 ORTHO05D009144 2.2e-09 65.9 95 42.1
AT1G64310 Arabidopsis thaliana HOM05D000001 ORTHO05D009144 2.9e-09 65.5 96 37.5
BcaB07g31452 Brassica carinata HOM05D000001 ORTHO05D009144 2.9e-09 65.5 91 40.7
CSS0021850 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009144 2.9e-09 65.5 98 42.9
CSS0047470 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009144 2.9e-09 65.5 98 42.9
Cfa021238 Carpinus fangiana HOM05D000001 ORTHO05D009144 2.9e-09 65.5 95 42.1
QL10p008020 Quercus lobata HOM05D000001 ORTHO05D009144 2.9e-09 65.5 101 41.6
RcHm_v2.0_Chr7g0192851 Rosa chinensis HOM05D000001 ORTHO05D009144 2.9e-09 65.5 102 39.2
C09p17940 Brassica napus HOM05D000001 ORTHO05D009144 3.8e-09 65.1 91 38.5
Psat5g115800 Pisum sativum HOM05D000001 ORTHO05D009144 3.8e-09 65.1 105 42.9
CiPaw.12G029900 Carya illinoinensis HOM05D000001 ORTHO05D009144 5.0e-09 64.7 98 38.8
BcaC04g22554 Brassica carinata HOM05D000001 ORTHO05D009144 6.5e-09 64.3 91 38.5
BolC9t54691H Brassica oleracea HOM05D000001 ORTHO05D009144 6.5e-09 64.3 91 38.5
Ca_16147_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009144 6.5e-09 64.3 127 37.0
Thhalv10023386m.g Eutrema salsugineum HOM05D000001 ORTHO05D009144 6.5e-09 64.3 88 38.6
TPR.G32121 Trifolium pratense HOM05D004595 ORTHO05D009144 6.5e-09 64.3 98 40.8
MBI16_g23843_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009144 8.5e-09 63.9 108 36.1
PGR044G0605 Punica granatum HOM05D000001 ORTHO05D009144 8.5e-09 63.9 98 39.8
MD06G1168900 Malus domestica HOM05D000001 ORTHO05D009144 1.5e-08 63.2 98 37.8
Medtr3g077200 Medicago truncatula HOM05D000001 ORTHO05D009144 1.5e-08 63.2 127 36.2
Hma1.2p1_0005F.1_g004210 Hydrangea macrophylla HOM05D000001 ORTHO05D009144 3.2e-08 62.0 98 41.8
PSO210G3264 Papaver somniferum HOM05D000001 ORTHO05D009144 3.2e-08 62.0 103 38.8
Cc04_g11810 Coffea canephora HOM05D000001 ORTHO05D009144 4.2e-08 61.6 95 44.2
Haze_07563 Corylus avellana HOM05D000001 ORTHO05D009144 4.2e-08 61.6 91 44.0
Cpa.g.sc110.18 Carica papaya HOM05D000001 ORTHO05D009144 5.5e-08 61.2 99 40.4
DCAR_026165 Daucus carota HOM05D000001 ORTHO05D009144 5.5e-08 61.2 103 35.9
PSO210G0300 Papaver somniferum HOM05D000001 ORTHO05D009144 7.2e-08 60.8 103 37.9
GSVIVG01007674001 Vitis vinifera HOM05D000001 ORTHO05D009144 7.2e-08 60.8 94 40.4
Carub.0002s0050 Capsella rubella HOM05D000001 ORTHO05D009144 9.4e-08 60.5 95 35.8
Manes.06G108866 Manihot esculenta HOM05D000001 ORTHO05D009144 9.4e-08 60.5 98 37.8
THA.LOC104799776 Tarenaya hassleriana HOM05D000001 ORTHO05D009144 9.4e-08 60.5 91 40.7
THA.LOC104800027 Tarenaya hassleriana HOM05D000001 ORTHO05D009144 9.4e-08 60.5 91 40.7
THA.LOC109116844 Tarenaya hassleriana HOM05D000001 ORTHO05D009144 9.4e-08 60.5 91 40.7
Lj1g0003935 Lotus japonicus HOM05D000001 ORTHO05D009144 1.6e-07 59.7 97 41.2
HanXRQChr08g0235051 Helianthus annuus HOM05D000001 ORTHO05D009144 2.1e-07 59.3 105 39.0
CARHR046650 Cardamine hirsuta HOM05D000001 ORTHO05D009144 2.7e-07 58.9 95 35.8
FAN08G3425 Fragaria x ananassa HOM05D000001 ORTHO05D009144 3.6e-07 58.5 62 48.4
Lalb_Chr08g0236661 Lupinus albus HOM05D000001 ORTHO05D009144 4.7e-07 58.2 97 39.2
COL.COLO4_30157 Corchorus olitorius HOM05D000001 ORTHO05D009144 1.0e-06 57.0 96 36.5
Sp2g00450 Schrenkiella parvula HOM05D000001 ORTHO05D009144 1.0e-06 57.0 98 33.7
Atru.chr6.1929 Acer truncatum HOM05D000001 ORTHO05D009862 1.4e-06 56.6 111 32.4
CsaV3_1G001200 Cucumis sativus L. HOM05D000001 ORTHO05D009144 1.4e-06 56.6 98 36.7
VMungo1309G1998 Vigna mungo HOM05D000001 ORTHO05D009144 1.4e-06 56.6 98 37.8
CANSAT80G0942 Cannabis sativa HOM05D000001 ORTHO05D009144 1.8e-06 56.2 94 38.3
CiPaw.04G151600 Carya illinoinensis HOM05D000001 ORTHO05D000003 4.0e-06 55.1 105 35.2
Potri.015G082366 Populus trichocarpa HOM05D000001 ORTHO05D009144 5.2e-06 54.7 95 36.8
Phvul.009G175100 Phaseolus vulgaris HOM05D000001 ORTHO05D009144 6.7e-06 54.3 94 38.3
Ciclev10033814m.g Citrus clementina HOM05D000001 ORTHO05D009862 8.8e-06 53.9 111 30.6
Glyma.04G186800 Glycine max HOM05D000001 ORTHO05D009144 8.8e-06 53.9 98 37.8


User provided reference genes

Program Settings