Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 1.2e-52 209.5 101 100.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.4e-16 89.7 53 83.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.4e-16 89.7 53 83.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 3.0e-16 88.6 54 79.6
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 3.9e-16 88.2 53 81.1
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 5.1e-16 87.8 55 76.4
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 8.8e-16 87.0 53 81.1
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.1e-15 86.7 53 79.2
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.1e-15 86.7 53 79.2
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 1.1e-15 86.7 53 79.2
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 1.5e-15 86.3 53 79.2
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 2.0e-15 85.9 53 77.4
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 2.6e-15 85.5 53 79.2
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 3.3e-15 85.1 53 77.4
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 4.4e-15 84.7 53 77.4
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 4.4e-15 84.7 56 71.4
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 5.7e-15 84.3 53 77.4
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 5.7e-15 84.3 53 77.4
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 5.7e-15 84.3 54 75.9
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 7.4e-15 84.0 48 81.2
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 7.4e-15 84.0 53 77.4
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 7.4e-15 84.0 53 77.4
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 1.3e-14 83.2 53 75.5
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 1.7e-14 82.8 53 77.4
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 1.7e-14 82.8 53 73.6
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.7e-14 82.8 53 73.6
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.7e-14 82.8 55 72.7
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.7e-14 82.8 53 75.5
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 2.8e-14 82.0 53 73.6
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 2.8e-14 82.0 53 75.5
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 2.8e-14 82.0 53 75.5
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 2.8e-14 82.0 54 72.2
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 2.8e-14 82.0 53 73.6
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 3.7e-14 81.6 59 66.1
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 4.8e-14 81.3 53 73.6
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 4.8e-14 81.3 53 75.5
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 6.3e-14 80.9 53 75.5
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 6.3e-14 80.9 53 73.6
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 8.2e-14 80.5 48 77.1
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 1.1e-13 80.1 53 71.7
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.4e-13 79.7 53 71.7
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 1.4e-13 79.7 53 73.6
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.8e-13 79.3 58 67.2
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 1.8e-13 79.3 53 73.6
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.8e-13 79.3 53 71.7
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 2.4e-13 79.0 53 71.7
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 2.4e-13 79.0 80 52.5
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 2.4e-13 79.0 58 62.1
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 3.1e-13 78.6 53 69.8
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 3.1e-13 78.6 53 69.8
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 3.1e-13 78.6 53 67.9
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.1e-13 78.6 56 64.3
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 3.1e-13 78.6 56 64.3
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 4.1e-13 78.2 53 71.7
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 5.3e-13 77.8 53 69.8
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 5.3e-13 77.8 51 70.6
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 5.3e-13 77.8 61 60.7
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 5.3e-13 77.8 53 75.5
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 5.3e-13 77.8 53 69.8
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 7.0e-13 77.4 54 68.5
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 7.0e-13 77.4 54 68.5
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.2e-12 76.6 53 67.9
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 1.2e-12 76.6 53 69.8
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 1.2e-12 76.6 53 69.8
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 1.2e-12 76.6 53 69.8
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.2e-12 76.6 53 67.9
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 1.6e-12 76.3 53 69.8
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 1.6e-12 76.3 53 67.9
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.6e-12 76.3 58 63.8
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 2.0e-12 75.9 53 69.8
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 2.6e-12 75.5 53 67.9
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 2.6e-12 75.5 53 67.9
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 2.6e-12 75.5 46 80.4
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 3.5e-12 75.1 48 75.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 3.5e-12 75.1 53 69.8
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 5.9e-12 74.3 48 70.8
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 5.9e-12 74.3 53 69.8
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.7e-11 72.8 53 66.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 2.2e-11 72.4 53 66.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 6.5e-11 70.9 51 70.6
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.1e-10 70.1 46 71.7
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.1e-10 70.1 53 62.3
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 5.5e-10 67.8 45 71.1
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 1.6e-09 66.2 68 54.4
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 2.1e-09 65.9 53 60.4
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 2.1e-09 65.9 53 60.4
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 6.1e-09 64.3 46 63.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.3e-08 62.4 53 64.2
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 1.1e-07 60.1 47 61.7
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 1.3e-06 56.6 54 57.4
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.7e-06 56.2 53 58.5
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 3.7e-06 55.1 64 46.9
BolC3t14543H Brassica oleracea HOM05D006995 ORTHO05D104637 3.7e-06 55.1 42 66.7
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 4.8e-06 54.7 41 65.9
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 8.2e-06 53.9 53 54.7
BcaC01g05868 Brassica carinata HOM05D001146 ORTHO05D000973 8.2e-06 53.9 42 64.3
C03p21590 Brassica napus HOM05D001146 ORTHO05D000973 8.2e-06 53.9 42 64.3
C07p20090 Brassica napus HOM05D001146 ORTHO05D000973 8.2e-06 53.9 42 64.3
BolC7t42530H Brassica oleracea HOM05D001146 ORTHO05D000973 8.2e-06 53.9 42 64.3


User provided reference genes

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