Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27839 Striga asiatica HOM05D007505 ORTHO05D009476 2.1e-76 288.9 142 100.0
SalBow5G2951 Salvia bowleyana HOM05D007505 ORTHO05D009476 2.2e-33 146.0 132 60.6
Oeu023645.1 Olea europaea HOM05D007505 ORTHO05D009476 3.2e-32 142.1 138 59.4
Nitab4.5_0010452g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 6.1e-31 137.9 142 56.3
CAN.G338.34 Capsicum annuum HOM05D007505 ORTHO05D009476 1.8e-30 136.3 138 55.8
Cfa019219 Carpinus fangiana HOM05D007505 ORTHO05D009476 3.0e-30 135.6 136 59.6
Cfa019221 Carpinus fangiana HOM05D007505 ORTHO05D009476 3.0e-30 135.6 136 59.6
Migut.O00159 Erythranthe guttata HOM05D007505 ORTHO05D009476 5.2e-30 134.8 150 55.3
Peaxi162Scf00089g01341 Petunia axillaris HOM05D002460 ORTHO05D002716 2.0e-29 132.9 125 56.0
Ciclev10022689m.g Citrus clementina HOM05D007505 ORTHO05D009476 3.3e-29 132.1 142 53.5
Prupe.5G165400 Prunus persica HOM05D007505 ORTHO05D009476 3.3e-29 132.1 143 53.8
Actinidia19362 Actinidia chinensis HOM05D007505 ORTHO05D009476 1.7e-28 129.8 135 57.0
Haze_07589 Corylus avellana HOM05D007505 ORTHO05D009476 6.3e-28 127.9 138 56.5
Solyc03g112190.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 1.1e-27 127.1 136 55.9
Sopen03g031290 Solanum pennellii HOM05D007505 ORTHO05D009476 2.4e-27 125.9 136 55.1
PGSC0003DMG400018186 Solanum tuberosum HOM05D007505 ORTHO05D009476 2.4e-27 125.9 131 56.5
TWI23G0126 Tripterygium wilfordii HOM05D007505 ORTHO05D009476 9.1e-27 124.0 125 55.2
Eucgr.B00218 Eucalyptus grandis HOM05D007505 ORTHO05D009476 1.2e-26 123.6 142 55.6
QL10p006874 Quercus lobata HOM05D007505 ORTHO05D009476 1.2e-26 123.6 138 57.2
Dinv38525 Davidia involucrata HOM05D007505 ORTHO05D009476 2.0e-26 122.9 130 54.6
Cc04_g11490 Coffea canephora HOM05D007505 ORTHO05D009476 2.7e-26 122.5 145 48.3
Rhsim08G0177900 Rhododendron simsii HOM05D007505 ORTHO05D009476 2.7e-26 122.5 143 50.3
TAR371G0969 Trochodendron aralioides HOM05D007505 ORTHO05D009476 3.5e-26 122.1 136 50.7
Lalb_Chr12g0201901 Lupinus albus HOM05D007505 ORTHO05D009476 4.5e-26 121.7 141 48.9
DCAR_021591 Daucus carota HOM05D007505 ORTHO05D009476 5.9e-26 121.3 139 54.0
PSO541G6268 Papaver somniferum HOM05D007505 ORTHO05D009476 5.9e-26 121.3 145 49.7
Hma1.2p1_0046F.1_g027150 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 7.7e-26 120.9 132 53.8
PSO675G7842 Papaver somniferum HOM05D007505 ORTHO05D009476 7.7e-26 120.9 145 47.6
Oeu040858.1 Olea europaea HOM05D007505 ORTHO05D009476 1.7e-25 119.8 134 52.2
Thecc.03G026000 Theobroma cacao HOM05D007505 ORTHO05D009476 3.8e-25 118.6 133 52.6
Potri.015G084200 Populus trichocarpa HOM05D007505 ORTHO05D009476 5.0e-25 118.2 139 51.8
FvH4_5g06310 Fragaria vesca HOM05D007505 ORTHO05D009476 6.5e-25 117.9 141 53.9
MD06G1165700 Malus domestica HOM05D007505 ORTHO05D009476 6.5e-25 117.9 140 53.6
Nitab4.5_0001793g0050 Nicotiana tabacum HOM05D002460 ORTHO05D002716 6.5e-25 117.9 123 54.5
FAN18G1005 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.1e-24 117.1 141 53.9
RcHm_v2.0_Chr7g0192551 Rosa chinensis HOM05D007505 ORTHO05D009476 1.5e-24 116.7 139 54.0
Sabra15G0107300 Salix brachista HOM05D007505 ORTHO05D009476 2.5e-24 115.9 134 49.3
CSS0021026 Camellia sinensis var. sinensis HOM05D007505 ORTHO05D009476 3.2e-24 115.5 125 53.6
COL.COLO4_36758 Corchorus olitorius HOM05D007505 ORTHO05D009476 4.2e-24 115.2 144 51.4
PGR083G2149 Punica granatum HOM05D007505 ORTHO05D009476 5.5e-24 114.8 142 50.0
vmacro19295 Vaccinium macrocarpon HOM05D007505 ORTHO05D009476 5.5e-24 114.8 144 49.3
Atru.chr9.2580 Acer truncatum HOM05D007505 ORTHO05D009476 7.2e-24 114.4 133 51.9
Cpa.g.sc159.18 Carica papaya HOM05D007505 ORTHO05D009476 7.2e-24 114.4 140 50.7
MELO3C002298.2 Cucumis melo HOM05D007505 ORTHO05D009476 9.4e-24 114.0 134 55.2
FAN08G0495 Fragaria x ananassa HOM05D007505 ORTHO05D009476 9.4e-24 114.0 141 52.5
FAN13G2123 Fragaria x ananassa HOM05D007505 ORTHO05D009476 1.6e-23 113.2 137 53.3
CiPaw.11G019500 Carya illinoinensis HOM05D007505 ORTHO05D009476 2.7e-23 112.5 140 50.0
Psat4g060840 Pisum sativum HOM05D007505 ORTHO05D009476 6.1e-23 111.3 141 49.6
AUR62008143 Chenopodium quinoa HOM05D007505 ORTHO05D009476 1.0e-22 110.5 138 50.0
Gorai.003G115400 Gossypium raimondii HOM05D007505 ORTHO05D009476 1.4e-22 110.2 141 49.6
Lsat_1_v5_gn_1_27760 Lactuca sativa HOM05D007505 ORTHO05D009476 1.4e-22 110.2 128 47.7
VMungo1215G0926 Vigna mungo HOM05D007505 ORTHO05D009476 1.4e-22 110.2 136 49.3
Gohir.A03G057100 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.8e-22 109.8 141 49.6
Gohir.D03G109300 Gossypium hirsutum HOM05D007505 ORTHO05D009476 1.8e-22 109.8 141 49.6
HanXRQChr02g0035811 Helianthus annuus HOM05D007505 ORTHO05D009476 1.8e-22 109.8 131 48.1
MD14G1171300 Malus domestica HOM05D007505 ORTHO05D009476 1.8e-22 109.8 137 49.6
Nitab4.5_0000003g0840 Nicotiana tabacum HOM05D007505 ORTHO05D009476 1.8e-22 109.8 136 50.0
ECA247G3499 Erigeron canadensis HOM05D007505 ORTHO05D009476 2.3e-22 109.4 142 47.2
Manes.06G110400 Manihot esculenta HOM05D007505 ORTHO05D009476 3.0e-22 109.0 137 50.4
AUR62028725 Chenopodium quinoa HOM05D007505 ORTHO05D009476 5.2e-22 108.2 133 50.4
EL10Ac5g10655 Beta vulgaris HOM05D007505 ORTHO05D009476 8.8e-22 107.5 132 50.0
Sed0000715 Sechium edule HOM05D007505 ORTHO05D009476 8.8e-22 107.5 127 52.0
ClCG03G003000 Citrullus lanatus HOM05D007505 ORTHO05D009476 1.2e-21 107.1 135 52.6
Glyma.05G041700 Glycine max HOM05D007505 ORTHO05D009476 1.2e-21 107.1 140 46.4
Glyma.17G084500 Glycine max HOM05D007505 ORTHO05D009476 1.2e-21 107.1 141 49.6
Medtr4g104870 Medicago truncatula HOM05D007505 ORTHO05D009476 2.6e-21 105.9 142 46.5
Nitab4.5_0008713g0030 Nicotiana tabacum HOM05D007505 ORTHO05D009476 2.6e-21 105.9 140 47.9
TPR.G37551 Trifolium pratense HOM05D007505 ORTHO05D009476 4.4e-21 105.1 132 50.8
Aqoxy5G03745 Aquilegia oxysepala HOM05D007505 ORTHO05D009476 7.5e-21 104.4 129 50.4
CsaV3_1G008840 Cucumis sativus L. HOM05D007505 ORTHO05D009476 7.5e-21 104.4 127 52.0
arahy.Tifrunner.gnm1.ann1.33YNZL Arachis hypogaea HOM05D007505 ORTHO05D009476 9.8e-21 104.0 128 51.6
Potri.012G086000 Populus trichocarpa HOM05D007505 ORTHO05D009476 9.8e-21 104.0 136 46.3
TAR629G2155 Trochodendron aralioides HOM05D001124 ORTHO05D001004 9.8e-21 104.0 117 52.1
AL7G28500 Arabidopsis lyrata HOM05D007505 ORTHO05D009476 4.8e-20 101.7 124 50.0
BcaNung07358 Brassica carinata HOM05D007505 ORTHO05D009476 1.1e-19 100.5 135 48.1
Lj4g0014699 Lotus japonicus HOM05D007505 ORTHO05D009476 1.1e-19 100.5 147 44.2
Nn3g16691 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.1e-19 100.5 124 48.4
BolC1t01930H Brassica oleracea HOM05D006209 ORTHO05D007645 1.4e-19 100.1 126 50.0
Duzib205G0367 Durio zibethinus HOM05D007505 ORTHO05D009476 1.4e-19 100.1 98 58.2
CANSAT80G2368 Cannabis sativa HOM05D007505 ORTHO05D009476 2.4e-19 99.4 152 43.4
BraA01t01538Z Brassica rapa HOM05D007505 ORTHO05D009476 3.1e-19 99.0 126 50.0
BcaC09g50839 Brassica carinata HOM05D007505 ORTHO05D009476 5.4e-19 98.2 126 50.0
A01p16040 Brassica napus HOM05D006209 ORTHO05D007645 5.4e-19 98.2 126 50.0
C01p20030 Brassica napus HOM05D006209 ORTHO05D007645 5.4e-19 98.2 126 50.0
Rhsim12G0168000 Rhododendron simsii HOM05D007505 ORTHO05D009476 5.4e-19 98.2 114 52.6
ATR0824G199 Amborella trichopoda HOM05D007505 ORTHO05D009476 1.2e-18 97.1 128 49.2
Nn4g22591 Nelumbo nucifera HOM05D007505 ORTHO05D009476 1.6e-18 96.7 132 48.5
Phvul.003G205200 Phaseolus vulgaris HOM05D007505 ORTHO05D009476 1.6e-18 96.7 99 52.5
AT4G24700 Arabidopsis thaliana HOM05D007505 ORTHO05D009476 3.5e-18 95.5 127 49.6
Sc04g0001500 Simmondsia chinensis HOM05D007505 ORTHO05D009476 4.5e-18 95.1 92 53.3
unitig_61.g26472 Utricularia gibba HOM05D007505 ORTHO05D009476 1.0e-17 94.0 133 46.6
Carub.0007s1636 Capsella rubella HOM05D007505 ORTHO05D009476 1.7e-17 93.2 125 48.8
THA.LOC104800396 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.7e-17 93.2 150 47.3
THA.LOC104800397 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.7e-17 93.2 150 47.3
Thhalv10026466m.g Eutrema salsugineum HOM05D007505 ORTHO05D009476 3.8e-17 92.0 125 48.8
Potri.012G086300 Populus trichocarpa HOM05D007505 ORTHO05D009476 3.8e-17 92.0 95 51.6
Sabra12G0061800 Salix brachista HOM05D007505 ORTHO05D009476 1.1e-16 90.5 117 47.9
THA.LOC104825178 Tarenaya hassleriana HOM05D007505 ORTHO05D009476 1.1e-16 90.5 150 46.7
MBI16_g31776_MAGBIO Magnolia biondii HOM05D007505 ORTHO05D009476 2.5e-16 89.4 121 46.3
Hma1.2p1_1092F.1_g255960 Hydrangea macrophylla HOM05D007505 ORTHO05D009476 2.1e-15 86.3 80 56.2
Dinv20598 Davidia involucrata HOM05D007505 ORTHO05D009476 2.8e-15 85.9 78 59.0
BraA03t14621Z Brassica rapa HOM05D000464 ORTHO05D000408 3.6e-15 85.5 133 43.6
BolC7t45867H Brassica oleracea HOM05D000464 ORTHO05D000408 4.7e-15 85.1 126 46.0
CARHR232080 Cardamine hirsuta HOM05D007505 ORTHO05D009476 6.1e-15 84.7 122 45.9
A03p55480 Brassica napus HOM05D007505 ORTHO05D009476 1.2e-13 80.5 125 42.4
Os02g0595200 Oryza sativa ssp. japonica HOM05D007505 ORTHO05D009476 2.8e-12 75.9 161 36.6
Duzib068G0261 Durio zibethinus HOM05D007505 ORTHO05D009476 3.1e-11 72.4 81 51.9
Zm00001eb246040 Zea mays HOM05D007505 ORTHO05D009476 2.0e-10 69.7 150 37.3
HPP92_004606 Vanilla planifolia HOM05D007505 ORTHO05D009476 2.3e-09 66.2 81 51.9
BcaC06g32867 Brassica carinata HOM05D007505 ORTHO05D009476 5.6e-08 61.6 100 42.0


User provided reference genes

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