Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27799 Striga asiatica HOM05D040414 ORTHO05D403595 2.1e-172 609.0 326 100.0
SGA_v2.0_scaffold90G27801 Striga asiatica HOM05D000069 ORTHO05D399115 1.2e-37 161.4 311 37.0
SGA_v2.0_scaffold90G27796 Striga asiatica HOM05D040414 ORTHO05D399210 2.5e-27 127.1 76 78.9
SGA_v2.0_scaffold90G27797 Striga asiatica HOM05D000069 ORTHO05D000060 1.3e-15 88.2 77 57.1
SGA_v2.0_scaffold4G01865 Striga asiatica HOM05D000919 ORTHO05D001187 1.8e-09 67.8 97 35.1
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 4.0e-09 66.6 99 36.4
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 4.0e-09 66.6 99 36.4
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 1.2e-08 65.1 91 38.5
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 2.0e-08 64.3 69 47.8
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 2.6e-08 63.9 96 39.6
Sp7g15050 Schrenkiella parvula HOM05D000519 ORTHO05D000959 2.6e-08 63.9 69 43.5
Ah.09g234140 Amaranthus hybridus HOM05D000519 ORTHO05D000959 9.8e-08 62.0 92 38.0
Oeu009405.1 Olea europaea HOM05D000519 ORTHO05D000959 1.3e-07 61.6 64 48.4
AUR62021845 Chenopodium quinoa HOM05D000519 ORTHO05D000959 1.7e-07 61.2 101 36.6
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 1.7e-07 61.2 86 33.7
TWI59G0838 Tripterygium wilfordii HOM05D000519 ORTHO05D000959 1.7e-07 61.2 96 38.5
DCAR_004907 Daucus carota HOM05D000519 ORTHO05D000959 2.2e-07 60.8 74 44.6
Solyc04g014790.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 3.7e-07 60.1 90 37.8
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 3.7e-07 60.1 87 34.5
Rhsim13G0144500 Rhododendron simsii HOM05D000519 ORTHO05D000959 6.3e-07 59.3 89 40.4
THA.LOC104817839 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 6.3e-07 59.3 79 38.0
Migut.M01408 Erythranthe guttata HOM05D000519 ORTHO05D000959 8.3e-07 58.9 75 42.7
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 8.3e-07 58.9 66 43.9
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 1.1e-06 58.5 90 36.7
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.4e-06 58.2 62 41.9
Nitab4.5_0005135g0030 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.4e-06 58.2 96 30.2
SalBow8G3278 Salvia bowleyana HOM05D000519 ORTHO05D000959 1.4e-06 58.2 82 40.2
SGA_v2.0_scaffold162G37922 Striga asiatica HOM05D040414 ORTHO05D404620 1.8e-06 57.8 49 51.0
AUR62012808 Chenopodium quinoa HOM05D000519 ORTHO05D000959 2.4e-06 57.4 97 34.0
TPR.G35897 Trifolium pratense HOM05D000519 ORTHO05D000959 4.1e-06 56.6 66 43.9
Ah.14g088600 Amaranthus hybridus HOM05D000519 ORTHO05D000959 5.4e-06 56.2 69 42.0
Ah.14g088610 Amaranthus hybridus HOM05D000519 ORTHO05D000959 5.4e-06 56.2 69 42.0
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.4e-06 56.2 70 35.7
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 5.4e-06 56.2 70 35.7
Peaxi162Scf00924g00035 Petunia axillaris HOM05D000519 ORTHO05D000959 5.4e-06 56.2 85 36.5
Rhsim13G0144700 Rhododendron simsii HOM05D000519 ORTHO05D000959 5.4e-06 56.2 96 35.4
HanXRQChr04g0096481 Helianthus annuus HOM05D000519 ORTHO05D000959 7.0e-06 55.8 84 34.5
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 7.0e-06 55.8 79 34.2
Nitab4.5_0001735g0110 Nicotiana tabacum HOM05D000519 ORTHO05D000959 7.0e-06 55.8 95 30.5
Peaxi162Scf00610g00115 Petunia axillaris HOM05D000519 ORTHO05D000959 7.0e-06 55.8 63 44.4
THA.LOC104815487 Tarenaya hassleriana HOM05D000519 ORTHO05D000959 7.0e-06 55.8 64 40.6
Medtr4g017620 Medicago truncatula HOM05D000519 ORTHO05D000959 9.1e-06 55.5 66 42.4
VMungo0540G0061 Vigna mungo HOM05D000519 ORTHO05D000959 9.1e-06 55.5 87 34.5


User provided reference genes

Program Settings