Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 2268.8 1192 100.0
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1647.1 1195 72.6
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1568.5 1193 71.8
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1466.8 1154 69.7
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1449.5 1085 73.0
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1349.3 1194 62.1
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1340.1 1168 62.7
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1313.5 1213 60.9
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1304.3 1204 59.6
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1302.0 1200 59.8
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1291.9 1203 59.4
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1275.4 1168 60.0
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1272.7 1199 58.9
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1271.1 1201 59.0
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1269.2 1202 59.0
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1246.1 1080 61.0
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1242.6 1203 58.4
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1239.6 1187 58.7
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1226.5 1079 60.2
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1219.9 1198 57.9
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1219.9 1204 57.6
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1219.5 1262 55.1
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1218.4 1184 58.4
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1217.2 1195 58.4
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1214.9 1193 58.2
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1214.5 1195 58.2
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1212.2 1202 57.2
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1208.4 1203 54.9
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1205.3 1177 57.3
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1197.2 1196 55.4
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1193.3 1204 56.5
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1192.2 1251 53.6
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1191.0 1180 57.5
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1183.3 1204 55.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1182.2 1206 57.5
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1168.7 1198 55.3
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1168.7 1170 54.6
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1167.1 1173 55.9
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1164.8 1210 55.3
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1164.1 1200 55.4
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1163.7 1044 58.9
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1163.3 1202 53.4
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1161.7 1043 58.4
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1161.7 1198 54.6
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1159.4 1209 55.7
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1159.4 1201 54.5
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1156.7 1207 55.7
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1155.6 1201 55.8
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1153.7 1203 55.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 0.0e+00 1153.3 1190 55.0
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1152.5 1169 54.3
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1152.5 1206 54.4
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1152.1 948 61.9
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1152.1 1165 55.0
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1148.3 1057 57.8
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 1194 56.1
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1146.3 1169 54.1
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1141.3 1208 53.1
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1137.9 1208 54.5
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1137.5 1170 54.5
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1117.4 1194 53.0
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1111.3 1201 52.5
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1101.7 1209 52.7
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1082.0 1115 56.2
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1077.4 1155 53.9
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 3.3e-311 1072.0 1195 50.7
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 1.2e-310 1070.1 1199 51.3
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 3.6e-310 1068.5 1202 50.7
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 4.7e-310 1068.1 1197 50.2
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 1.4e-309 1066.6 1388 47.6
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 2.3e-309 1065.8 1194 52.5
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 2.3e-309 1065.8 1194 52.5
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 2.1e-305 1052.7 1191 49.2
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 3.5e-305 1052.0 998 56.0
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 6.0e-305 1051.2 1165 51.1
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 5.6e-303 1044.6 1190 52.4
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 2.8e-302 1042.3 1193 50.5
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 2.4e-298 1029.2 1544 41.4
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 3.0e-296 1022.3 1194 49.2
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 3.3e-295 1018.8 1187 50.9
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 4.3e-295 1018.5 1174 51.6
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 1.2e-292 1010.4 1192 49.1
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 1.2e-284 983.8 1061 49.5
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 9.9e-284 980.7 1051 50.3
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 3.0e-280 969.1 1186 47.0
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.7e-257 892.9 1249 43.5
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.5e-242 843.2 1006 47.9
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 8.8e-232 808.1 719 58.1
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 9.7e-231 804.7 1083 43.6
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 4.4e-223 779.2 734 55.3
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 8.6e-203 711.8 1079 42.3
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 5.2e-200 702.6 636 56.4
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.3e-195 687.2 873 48.1
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.5e-186 657.9 669 53.7
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.3e-186 656.8 661 53.9
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.6e-185 654.4 965 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 1.9e-181 641.0 1081 38.4
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 2.3e-171 607.4 1058 36.1
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 1.1e-168 598.6 828 45.3
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 5.6e-162 576.2 1107 36.0
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.4e-160 571.6 692 48.8
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 1.8e-155 554.7 1090 35.6
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 1.5e-151 541.6 488 58.6
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 3.8e-126 457.2 1249 30.3
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 4.7e-100 370.5 430 50.5
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.4e-91 342.4 427 51.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.1e-55 222.2 275 40.4
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 1.0e-54 219.9 179 58.1
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 2.7e-31 142.1 110 61.8
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 9.0e-27 127.1 271 30.6
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 3.6e-15 88.6 307 30.0
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 5.7e-13 81.3 157 34.4
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.1e-11 77.0 77 49.4
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.5e-10 73.2 76 46.1
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 2.2e-09 69.3 70 48.6
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 8.5e-09 67.4 60 56.7
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.2e-07 63.5 47 66.0
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 2.1e-07 62.8 36 72.2
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 2.7e-07 62.4 36 72.2
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 3.6e-07 62.0 118 37.3
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 1.4e-06 60.1 42 61.9
Lsat_1_v5_gn_0_32400 Lactuca sativa HOM05D002303 ORTHO05D004329 5.2e-06 58.2 75 41.3


User provided reference genes

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