Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 7.5e-101 370.5 190 100.0
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 3.0e-94 348.6 190 93.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 5.4e-83 311.2 188 83.0
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.6e-82 309.7 190 81.1
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 2.6e-77 292.4 184 78.8
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 6.4e-76 287.7 185 76.8
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.1e-75 287.0 185 77.3
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 7.1e-75 284.3 188 73.9
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 7.1e-75 284.3 185 75.7
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 7.1e-75 284.3 185 75.7
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 7.1e-75 284.3 185 75.7
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 6.0e-74 281.2 186 74.7
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.7e-73 279.6 185 74.1
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 5.1e-73 278.1 187 72.7
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 6.6e-73 277.7 200 71.5
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.1e-72 276.9 186 73.7
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-72 276.2 185 71.4
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-72 276.2 185 71.4
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.6e-71 273.1 186 73.1
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 6.2e-71 271.2 186 71.5
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 6.2e-71 271.2 186 71.5
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.8e-70 269.6 184 68.5
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 8.9e-70 267.3 185 70.8
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.9e-70 267.3 187 70.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.9e-70 267.3 187 70.6
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 1.2e-69 266.9 205 65.9
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.5e-69 266.5 185 70.8
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 2.9e-68 262.3 184 69.0
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.7e-68 261.9 186 69.4
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 3.7e-68 261.9 186 68.8
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 4.9e-68 261.5 185 70.3
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 4.9e-68 261.5 188 67.0
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 6.4e-68 261.2 190 69.5
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 8.4e-68 260.8 185 68.6
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 8.4e-68 260.8 186 70.4
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.1e-67 260.4 185 68.1
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.1e-67 260.4 182 69.8
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.1e-67 260.4 190 65.8
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.4e-67 260.0 183 69.9
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.9e-67 259.6 185 69.2
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 5.4e-67 258.1 190 67.4
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 7.1e-67 257.7 185 68.6
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 7.1e-67 257.7 185 67.6
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 9.2e-67 257.3 188 66.5
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 1.6e-66 256.5 185 69.2
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.0e-66 254.6 185 68.1
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 6.0e-66 254.6 185 68.1
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 7.8e-66 254.2 188 63.8
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.8e-66 254.2 184 67.4
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.7e-65 253.1 185 67.0
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.7e-65 253.1 184 67.4
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.7e-65 253.1 188 67.6
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 3.9e-65 251.9 185 67.0
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 5.1e-65 251.5 183 67.2
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 5.1e-65 251.5 189 66.1
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.1e-64 250.4 183 66.7
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.3e-64 248.8 188 66.5
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 4.3e-64 248.4 182 68.1
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 5.6e-64 248.1 188 64.9
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 5.6e-64 248.1 174 69.5
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 5.6e-64 248.1 183 66.7
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 7.3e-64 247.7 176 68.2
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 9.6e-64 247.3 184 65.2
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 9.6e-64 247.3 186 66.1
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.6e-63 246.5 182 64.3
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.1e-63 246.1 189 66.7
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.8e-63 245.7 202 64.4
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 2.8e-63 245.7 177 67.8
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 3.6e-63 245.4 204 61.3
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 3.6e-63 245.4 188 66.0
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.7e-63 245.0 202 63.9
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 4.7e-63 245.0 188 65.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 4.7e-63 245.0 185 64.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-62 243.8 189 66.7
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.1e-62 243.8 177 65.5
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.4e-62 243.4 181 65.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 1.8e-62 243.0 182 65.4
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.1e-62 242.3 189 65.6
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.1e-62 242.3 188 65.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.1e-62 242.3 185 65.4
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 5.2e-62 241.5 183 66.7
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 1.2e-61 240.4 185 62.2
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 9.9e-61 237.3 177 64.4
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.3e-60 236.9 189 62.4
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.2e-60 236.1 187 65.2
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 2.2e-60 236.1 185 64.9
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 6.4e-60 234.6 188 61.7
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 6.4e-60 234.6 185 64.3
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.1e-59 233.8 177 61.0
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 2.4e-59 232.6 152 72.4
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 3.2e-59 232.3 273 49.5
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 4.2e-59 231.9 206 57.8
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 7.1e-59 231.1 175 64.0
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 2.1e-58 229.6 182 61.5
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 1.0e-57 227.3 157 72.6
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 4.8e-55 218.4 188 57.4
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.1e-55 217.6 178 57.9
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.4e-53 211.8 153 69.3
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 9.9e-53 210.7 186 58.6
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.2e-51 205.3 161 64.6
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.3e-49 200.3 189 52.4
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.3e-49 200.3 189 51.9
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 3.0e-49 199.1 185 52.4
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.5e-48 196.1 189 50.8
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 2.1e-47 193.0 189 50.8
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.1e-46 190.7 189 50.8
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 1.5e-45 186.8 189 49.7
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 1.5e-45 186.8 207 50.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 7.6e-45 184.5 189 49.7
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 2.2e-44 183.0 185 55.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 7.1e-43 177.9 189 49.7
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 6.0e-42 174.9 189 49.7
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 6.0e-42 174.9 183 54.1
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 3.9e-41 172.2 189 48.7
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 1.1e-40 170.6 189 48.1
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-40 170.6 189 48.1
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.1e-40 170.6 189 48.1
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 4.8e-39 165.2 189 47.1
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 5.3e-38 161.8 189 46.0
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 5.3e-38 161.8 189 46.0
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 1.1e-35 154.1 148 53.4
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.1e-35 154.1 106 73.6
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-32 143.7 155 52.9
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 4.8e-31 138.7 189 43.4
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.6e-26 123.6 78 73.1
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.6e-26 122.1 109 59.6
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.1e-22 110.9 102 58.8
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 2.0e-21 106.7 167 34.1
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.0e-20 104.4 155 38.7
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.9e-20 102.8 87 55.2
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 3.8e-20 102.4 82 67.1
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 3.8e-20 102.4 85 64.7
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 1.1e-19 100.9 73 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 7.9e-18 94.7 151 38.4
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 2.3e-17 93.2 119 39.5
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.9e-17 92.4 81 54.3
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.9e-17 92.4 76 55.3
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.1e-17 92.0 76 55.3
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 2.8e-15 86.3 61 63.9
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 6.3e-15 85.1 83 56.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.2e-11 72.8 66 60.6
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 4.2e-11 72.4 91 49.5
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 7.0e-06 55.1 45 55.6


User provided reference genes

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