Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 1.3e-52 209.5 108 100.0
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 5.8e-42 174.1 110 80.9
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 1.9e-40 169.1 110 80.0
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 2.3e-38 162.2 105 79.0
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 2.3e-38 162.2 101 79.2
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 1.5e-37 159.5 109 75.2
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 3.3e-37 158.3 108 74.1
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 5.7e-37 157.5 110 71.8
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 7.4e-37 157.1 107 75.7
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 8.2e-36 153.7 103 75.7
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 1.1e-35 153.3 96 78.1
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 1.8e-35 152.5 107 72.9
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 1.8e-35 152.5 111 68.5
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 3.1e-35 151.8 97 75.3
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 4.1e-35 151.4 101 73.3
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 4.1e-35 151.4 99 76.8
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 4.1e-35 151.4 109 71.6
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 6.9e-35 150.6 111 69.4
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 6.9e-35 150.6 97 74.2
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.5e-34 149.4 96 76.0
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 1.5e-34 149.4 97 75.3
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 1.5e-34 149.4 104 71.2
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 2.0e-34 149.1 107 72.0
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 2.0e-34 149.1 96 77.1
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 2.6e-34 148.7 99 75.8
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 2.6e-34 148.7 99 73.7
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 3.4e-34 148.3 109 69.7
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 4.5e-34 147.9 103 70.9
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 4.5e-34 147.9 99 75.8
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 4.5e-34 147.9 99 73.7
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 4.5e-34 147.9 99 73.7
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 4.5e-34 147.9 108 70.4
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 7.6e-34 147.1 99 72.7
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 7.6e-34 147.1 99 72.7
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 7.6e-34 147.1 99 72.7
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 1.3e-33 146.4 107 69.2
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.7e-33 146.0 109 70.6
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 2.9e-33 145.2 105 69.5
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 2.9e-33 145.2 110 69.1
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 2.9e-33 145.2 109 70.6
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 2.9e-33 145.2 99 70.7
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 3.8e-33 144.8 107 68.2
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 6.5e-33 144.1 99 71.7
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 6.5e-33 144.1 110 69.1
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 8.5e-33 143.7 108 69.4
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 8.5e-33 143.7 103 71.8
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 8.5e-33 143.7 103 71.8
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 8.5e-33 143.7 107 71.0
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 8.5e-33 143.7 107 71.0
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.1e-32 143.3 96 70.8
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 1.1e-32 143.3 99 70.7
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 1.1e-32 143.3 109 69.7
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.1e-32 143.3 109 69.7
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.1e-32 143.3 109 69.7
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.1e-32 143.3 109 69.7
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.1e-32 143.3 109 69.7
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.1e-32 143.3 109 69.7
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 1.1e-32 143.3 99 70.7
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 1.9e-32 142.5 105 68.6
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 2.5e-32 142.1 101 72.3
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 2.5e-32 142.1 99 69.7
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 3.2e-32 141.7 99 72.7
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 3.2e-32 141.7 111 65.8
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 3.2e-32 141.7 106 69.8
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 4.2e-32 141.4 99 71.7
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 4.2e-32 141.4 119 63.9
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 4.2e-32 141.4 99 69.7
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 5.5e-32 141.0 99 69.7
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 7.2e-32 140.6 90 75.6
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 1.2e-31 139.8 106 67.9
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 1.6e-31 139.4 88 79.5
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 2.1e-31 139.0 95 72.6
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 2.1e-31 139.0 96 72.9
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 2.1e-31 139.0 96 72.9
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 2.7e-31 138.7 106 68.9
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 2.7e-31 138.7 104 70.2
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 4.6e-31 137.9 89 76.4
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 4.6e-31 137.9 100 71.0
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 4.6e-31 137.9 96 67.7
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 6.1e-31 137.5 103 70.9
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 6.1e-31 137.5 103 70.9
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 6.1e-31 137.5 103 70.9
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 6.1e-31 137.5 90 71.1
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 1.0e-30 136.7 94 70.2
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.4e-30 136.3 88 73.9
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 1.8e-30 136.0 110 65.5
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 2.3e-30 135.6 87 74.7
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 3.9e-30 134.8 105 64.8
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 1.1e-29 133.3 89 69.7
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 1.5e-29 132.9 88 72.7
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 1.9e-29 132.5 83 74.7
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 5.7e-29 131.0 104 62.5
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 2.2e-28 129.0 117 61.5
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.1e-27 125.2 80 72.5
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 3.1e-27 125.2 82 73.2
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 6.9e-27 124.0 104 62.5
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 4.5e-26 121.3 149 49.7
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 1.1e-24 116.7 104 61.5
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 7.2e-24 114.0 105 60.0
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 2.3e-22 109.0 105 57.1
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 3.7e-20 101.7 83 63.9
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 3.7e-20 101.7 87 55.2
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 4.8e-20 101.3 82 64.6
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 6.3e-20 100.9 87 58.6
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 6.3e-20 100.9 87 58.6
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 6.3e-20 100.9 77 67.5
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 1.4e-19 99.8 84 64.3
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 2.4e-19 99.0 65 69.2
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 2.6e-18 95.5 109 41.3
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 5.5e-16 87.8 105 43.8
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 4.7e-15 84.7 58 70.7
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 4.7e-15 84.7 55 69.1
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.0e-14 83.6 81 54.3
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 2.3e-14 82.4 58 69.0
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 2.3e-14 82.4 83 53.0
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 3.9e-14 81.6 75 62.7
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 2.6e-13 79.0 58 63.8
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 2.8e-12 75.5 75 60.0
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 2.8e-12 75.5 90 45.6
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 6.3e-12 74.3 64 56.2
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 1.8e-11 72.8 49 61.2
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 1.0e-09 67.0 60 55.0
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 2.2e-09 65.9 45 68.9
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 2.1e-07 59.3 46 58.7
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 6.7e-06 54.3 41 61.0
A09p05680 Brassica napus HOM05D006721 ORTHO05D000476 8.8e-06 53.9 28 89.3


User provided reference genes

Program Settings