Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 9.5e-175 617.1 392 100.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.7e-121 439.5 314 97.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.2e-116 424.1 468 67.9
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 1.7e-115 420.2 422 72.5
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 6.0e-113 411.8 314 92.0
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 6.0e-113 411.8 391 76.0
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.9e-112 409.1 391 68.3
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 6.7e-112 408.3 399 63.9
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 1.1e-111 407.5 391 73.4
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 5.7e-111 405.2 477 65.6
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 2.1e-110 403.3 391 71.1
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 2.1e-110 403.3 391 71.1
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 3.7e-110 402.5 391 71.1
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 8.2e-110 401.4 391 63.2
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.1e-109 401.0 313 87.5
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.1e-109 401.0 391 72.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.4e-109 400.6 391 76.2
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 4.1e-109 399.1 391 75.2
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 4.1e-109 399.1 391 75.2
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 6.9e-109 398.3 391 65.5
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.2e-108 397.5 315 89.8
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.2e-108 397.5 391 76.0
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.5e-108 397.1 391 75.7
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 4.5e-108 395.6 391 70.1
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.0e-107 394.4 391 73.9
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.7e-107 393.7 314 87.9
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 2.9e-107 392.9 391 74.7
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 3.8e-107 392.5 391 67.0
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.4e-106 390.6 391 73.7
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.4e-106 390.6 391 74.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.4e-106 390.6 391 74.2
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.4e-106 390.6 391 73.1
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.9e-106 390.2 391 69.3
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.9e-106 390.2 314 87.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.5e-106 389.8 392 71.7
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.2e-106 389.4 391 73.7
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 3.2e-106 389.4 391 73.9
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 4.2e-106 389.0 314 78.3
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 4.2e-106 389.0 391 73.4
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 9.3e-106 387.9 391 73.1
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 9.3e-106 387.9 391 74.4
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 1.6e-105 387.1 391 74.2
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 7.9e-105 384.8 391 73.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.0e-104 384.4 389 72.2
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 1.0e-104 384.4 391 73.9
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.3e-104 384.0 391 67.5
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 2.3e-104 383.3 391 70.1
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 3.0e-104 382.9 391 73.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 3.9e-104 382.5 391 73.9
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 6.7e-104 381.7 391 66.2
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.9e-103 380.2 391 72.6
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 1.9e-103 380.2 391 66.2
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 2.5e-103 379.8 391 73.9
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 4.3e-103 379.0 456 64.9
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 5.7e-103 378.6 391 72.4
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 7.4e-103 378.3 391 72.6
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 1.3e-102 377.5 391 72.4
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.3e-102 377.5 381 73.2
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.8e-102 376.3 315 76.2
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.8e-102 376.3 315 76.2
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.8e-102 376.3 315 76.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.8e-102 376.3 315 70.8
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.8e-102 376.3 315 76.2
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.7e-102 375.9 412 60.4
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 3.7e-102 375.9 391 62.9
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 4.8e-102 375.6 391 71.4
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 4.8e-102 375.6 391 72.4
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 6.3e-102 375.2 314 85.7
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 8.2e-102 374.8 391 73.4
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.4e-101 374.0 387 69.5
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.8e-101 373.6 412 60.2
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 2.4e-101 373.2 593 52.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 9.1e-101 371.3 391 62.4
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.2e-100 370.9 391 62.7
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.0e-100 370.2 314 70.7
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 4.5e-100 369.0 391 71.4
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.7e-99 367.1 391 61.9
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 5.0e-99 365.5 334 69.2
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 2.5e-98 363.2 395 68.9
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 3.2e-98 362.8 314 85.0
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.6e-97 359.0 391 68.8
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.0e-96 357.8 391 58.1
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.8e-96 357.1 314 84.4
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 2.2e-94 350.1 314 79.6
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 6.3e-94 348.6 314 79.3
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 6.3e-94 348.6 314 79.3
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 6.3e-94 348.6 314 79.3
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.1e-93 345.9 314 78.7
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.1e-93 345.9 391 61.6
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 5.3e-93 345.5 314 78.7
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 9.1e-93 344.7 391 67.0
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 4.5e-92 342.4 428 54.9
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.0e-91 341.3 314 78.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 1.3e-91 340.9 314 78.3
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 1.3e-91 340.9 314 78.3
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 5.0e-91 339.0 366 71.9
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 5.0e-91 339.0 314 78.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 5.0e-91 339.0 314 71.0
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 8.5e-91 338.2 314 77.4
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.1e-90 337.8 391 66.5
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 7.2e-90 335.1 314 77.1
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.7e-89 333.2 366 71.6
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 4.7e-89 332.4 366 71.3
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 2.3e-88 330.1 391 59.1
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 3.3e-87 326.2 391 67.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 6.3e-86 322.0 313 76.0
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.4e-85 320.9 420 55.7
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 1.8e-85 320.5 394 53.0
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 4.1e-85 319.3 366 59.0
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.2e-81 307.8 314 61.8
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.1e-81 305.4 316 56.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.5e-79 300.8 318 59.7
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.8e-78 296.6 324 57.7
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 8.2e-78 295.0 326 58.0
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 8.2e-78 295.0 326 58.0
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.0e-77 292.0 350 63.1
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-76 290.4 326 57.7
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 2.0e-76 290.4 391 57.0
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.5e-76 289.7 344 67.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 4.5e-76 289.3 340 56.5
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 7.7e-76 288.5 314 56.7
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.9e-74 283.9 352 54.0
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 3.2e-74 283.1 391 56.8
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 7.2e-74 282.0 317 58.0
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 9.4e-74 281.6 391 56.3
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.2e-72 275.8 375 52.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 5.2e-72 275.8 314 59.2
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 4.4e-71 272.7 444 40.8
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 7.5e-71 271.9 323 52.9
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 9.8e-71 271.6 267 70.8
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 2.0e-68 263.8 408 44.6
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 8.0e-65 251.9 391 45.0
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 2.2e-62 243.8 326 49.7
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 4.1e-61 239.6 217 67.7
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-54 216.9 322 43.2
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.9e-54 216.9 238 49.2
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 5.4e-53 212.6 173 72.8
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 5.4e-53 212.6 173 72.8
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 9.2e-53 211.8 325 44.0
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 8.6e-51 205.3 336 47.9
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 4.3e-50 203.0 323 39.6
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 1.9e-42 177.6 315 47.3
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 5.2e-40 169.5 152 56.6
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 4.7e-33 146.4 186 47.3
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.7e-30 137.9 80 82.5
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.4e-29 134.8 406 32.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 5.4e-29 132.9 257 35.4
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 4.6e-28 129.8 182 42.9
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 3.0e-27 127.1 257 35.0
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.1e-26 125.2 138 50.7
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 8.1e-25 119.0 147 49.7
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.9e-24 115.9 138 47.8
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 9.9e-23 112.1 216 36.1
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.1e-21 108.6 58 81.0
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 3.3e-18 97.1 120 64.2
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 1.3e-17 95.1 123 44.7
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-14 84.7 141 36.2
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 2.2e-14 84.3 164 31.7
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.8e-14 83.6 80 55.0
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.1e-13 82.0 45 82.2
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 1.4e-13 81.6 79 55.7
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.4e-13 80.9 40 92.5
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 2.4e-13 80.9 40 92.5
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 3.5e-12 77.0 81 48.1
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.8e-11 74.7 116 37.9
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 5.1e-11 73.2 47 61.7
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 1.5e-10 71.6 58 63.8
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.5e-10 70.9 113 55.8
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.7e-09 67.0 124 32.3
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 6.2e-09 66.2 80 47.5
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.6e-07 60.8 38 73.7


User provided reference genes

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