Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 2009.2 1005 100.0
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1029 82.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1007 81.0
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1635.5 1009 80.9
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1006 79.8
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1011 79.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1565.8 1015 77.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1546.2 1009 76.5
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1545.8 1011 76.9
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1523.5 1009 75.4
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1518.8 1009 75.4
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1518.4 1009 74.9
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1515.0 1009 75.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1511.9 1020 74.2
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1511.9 1007 75.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1504.2 1009 74.9
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1502.6 1015 74.3
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1500.3 1018 73.6
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1497.3 1009 74.0
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1496.9 1016 73.8
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1496.5 1025 73.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1496.5 999 73.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1494.9 1025 73.4
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1488.8 1014 72.7
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1486.5 1022 73.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1486.5 1018 73.3
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1485.3 1011 73.7
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1485.3 1022 72.9
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1484.2 1019 72.6
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1483.8 1024 72.9
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1482.6 1020 73.9
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1481.8 1016 73.4
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1481.1 1007 74.2
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1479.2 1001 74.2
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1478.0 1003 73.5
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1477.6 1004 73.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1476.8 1019 73.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1476.8 1034 72.1
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1472.2 949 76.1
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1472.2 1017 72.4
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1471.4 1017 72.0
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1469.1 1022 73.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1464.9 1006 72.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1464.5 1019 72.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1463.7 1018 72.2
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1462.2 1024 72.0
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1461.0 938 76.7
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1459.9 1011 72.3
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1456.4 1015 72.7
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1453.3 1006 72.7
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1452.6 1017 72.0
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1449.9 938 76.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1448.3 1057 69.3
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1448.3 1008 72.5
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1448.0 939 75.5
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1447.2 1006 72.0
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1445.3 1014 71.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1444.9 1015 72.3
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1441.4 1012 72.2
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1437.9 1017 71.3
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1437.9 1015 71.0
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1436.0 978 73.1
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1434.1 1063 68.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1432.5 998 71.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1431.4 1046 69.2
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1431.0 960 73.0
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1430.2 1009 70.8
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1429.8 997 71.1
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1428.7 1017 71.0
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1428.3 1098 67.8
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1426.4 963 72.7
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1426.0 1009 71.0
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1423.3 963 72.4
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1423.3 1013 70.2
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1422.5 997 70.7
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1421.8 997 71.1
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1421.4 996 71.1
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1420.2 998 70.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1419.1 1008 69.9
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1419.1 1127 65.7
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1417.9 998 71.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1417.9 996 70.8
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1417.1 1108 66.0
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1413.3 998 70.7
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1412.1 934 73.7
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1411.4 1005 70.2
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1017 69.6
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1409.4 1007 70.1
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1408.7 932 74.4
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1407.5 1046 68.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1403.7 1004 69.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1403.3 1007 70.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1402.1 1007 70.5
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1401.7 996 69.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1401.3 1002 70.2
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1400.2 997 70.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1397.1 998 69.8
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1396.7 1015 70.8
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1393.3 1017 68.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1392.5 1120 64.6
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1392.1 1004 69.8
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1390.6 1004 69.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1387.9 1004 69.2
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1385.2 999 70.0
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1384.0 960 71.6
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1382.1 1014 69.0
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1376.3 1067 65.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1338.9 897 73.2
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1291.2 949 65.8
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1290.4 797 79.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1269.6 924 66.7
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1269.6 842 74.2
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1260.7 1007 65.5
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1210.3 888 66.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1152.9 1040 60.3
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1151.0 1040 60.2
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1147.1 957 60.2
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1129.0 729 75.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1110.1 841 68.4
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1081.6 1006 57.3
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 8.2e-311 1070.5 742 73.7
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 9.2e-299 1030.4 667 76.3
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.5e-293 1013.1 952 52.9
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 1.1e-291 1006.9 945 52.1
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.1e-279 966.1 883 60.0
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 8.1e-279 964.1 917 52.6
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 3.3e-272 942.2 651 71.4
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.4e-259 899.4 666 68.0
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.4e-253 879.0 816 55.9
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.6e-245 852.8 580 72.6
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.8e-241 840.1 705 59.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.6e-234 817.0 916 45.0
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.7e-221 771.5 524 73.5
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.9e-196 689.9 599 57.6
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.3e-187 659.8 443 75.4
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.0e-177 626.3 575 56.5
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 6.2e-170 602.4 560 55.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.4e-168 596.3 528 61.6
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 8.1e-162 575.5 408 70.6
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 6.9e-161 572.4 428 68.7
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 5.3e-153 546.2 510 59.8
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.4e-150 538.1 346 77.7
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-140 505.4 473 60.3
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 3.9e-140 503.4 455 59.8
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.6e-125 454.9 407 60.9
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.3e-116 424.5 926 31.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 6.7e-116 422.9 321 60.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.4e-113 414.5 912 31.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.3e-98 365.5 321 56.7
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.8e-98 364.4 263 64.6
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.9e-94 351.7 280 67.1
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.2e-94 350.9 935 27.6
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.7e-93 347.1 849 31.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.8e-92 345.1 237 67.9
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 4.1e-73 280.8 154 84.4
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 4.0e-60 237.7 155 70.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.0e-52 211.1 806 22.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.0e-51 208.8 222 48.2
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.3e-41 173.3 158 55.7
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.2e-40 172.9 217 49.8
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-39 168.7 150 56.0
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 5.6e-38 164.1 240 37.9
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 9.6e-38 163.3 221 42.5
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.8e-36 159.1 464 28.2
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 9.0e-36 156.8 144 56.2
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.9e-34 151.0 153 60.1
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 5.1e-31 141.0 162 43.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 1.5e-30 139.4 421 27.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 6.2e-29 134.0 107 61.7
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 6.9e-28 130.6 237 36.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 4.5e-27 127.9 135 56.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-23 115.9 104 56.7
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 6.7e-23 114.0 105 53.3
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.9e-18 98.6 228 27.2
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.2e-16 93.2 52 80.8
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 3.4e-11 75.1 121 43.0
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 5.9e-11 74.3 56 62.5
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 5.5e-09 67.8 173 34.7
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 3.6e-08 65.1 48 62.5
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.1e-08 64.3 45 64.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.4e-07 63.2 36 80.6


User provided reference genes

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