Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 3799.6 1896 100.0
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 2501.5 1966 67.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1814.3 2017 51.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1800.8 2019 50.8
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1739.9 2030 49.6
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1690.2 2002 48.9
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1689.5 2041 48.7
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1687.5 2031 48.8
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1657.9 2024 48.3
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1644.0 2062 47.5
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1636.7 2016 47.3
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1631.7 2035 48.0
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1630.2 2014 47.7
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1625.5 2036 47.5
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1615.1 2046 46.8
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1609.3 2021 47.1
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1606.3 1991 46.9
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1603.2 2019 46.8
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1602.8 2020 47.1
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1602.0 2018 47.4
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1601.3 2021 47.4
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1600.5 2043 46.6
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1595.9 2025 46.9
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1589.7 2010 47.2
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1589.3 2045 47.4
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1588.9 2037 47.3
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1588.2 2009 47.0
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1587.8 1995 48.0
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1582.8 2018 46.9
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1577.4 2030 46.4
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1575.5 1997 47.1
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1575.5 2024 46.2
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1574.3 2040 46.2
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1557.3 2027 46.5
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1548.9 2019 45.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1541.9 2028 45.7
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1538.1 2030 45.6
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1526.5 2037 46.5
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1525.0 1941 47.4
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1513.4 2005 45.8
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1508.8 1901 47.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1506.5 2052 45.2
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1488.0 2026 44.7
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1477.6 2030 44.2
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1471.1 2036 44.4
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1469.9 2031 44.2
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1459.9 1910 46.2
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1459.1 2027 43.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1439.5 1959 44.6
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1439.5 2028 43.7
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1437.6 2030 43.3
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1435.6 2004 43.8
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1429.1 2031 42.6
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1415.6 2035 42.7
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1411.4 2048 43.4
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1405.6 2029 43.1
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1399.8 2008 43.1
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1394.8 2016 42.8
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1393.6 2043 42.6
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1392.5 1933 44.2
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1391.3 2030 43.0
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1386.7 2031 42.2
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1374.0 1977 43.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1369.4 2023 42.2
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1369.4 1921 43.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1356.7 2072 42.2
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1355.1 2001 42.6
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1354.7 2044 41.4
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1354.7 1992 42.1
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1349.0 2031 41.7
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1344.3 1996 41.9
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1338.6 1988 42.9
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1323.1 1997 42.0
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1322.4 1997 41.8
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1313.1 2000 41.8
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1312.4 1987 42.0
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1309.7 1997 41.7
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1307.0 1998 40.8
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1301.2 2115 38.9
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1300.8 1940 42.5
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1298.5 2003 42.0
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1294.6 1637 47.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1288.9 2001 41.4
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1279.6 2005 41.5
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1279.6 2005 41.6
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1276.2 1999 41.4
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1275.0 1999 41.4
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1217.2 1739 44.1
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1201.8 1743 44.2
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1127.1 2067 38.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 1.2e-304 1050.8 1478 43.5
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 5.2e-303 1045.4 1478 43.5
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 3.4e-302 1042.7 1809 37.9
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 5.8e-294 1015.4 1754 37.9
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 1.9e-276 957.2 2017 34.2
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 4.3e-273 946.0 1981 33.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 3.3e-265 919.8 1931 36.0
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 1.7e-261 907.5 1226 44.5
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 2.1e-259 900.6 2117 31.9
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.4e-247 861.3 1650 36.3
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 5.4e-207 726.5 2157 29.0
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 5.2e-202 709.9 1516 33.0
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 6.2e-179 633.3 2074 27.9
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 9.6e-148 529.6 649 49.2
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.5e-140 505.8 1687 27.9
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 7.1e-135 486.9 1858 25.7
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 6.3e-131 473.8 345 71.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.7e-123 449.1 1135 30.5
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.9e-117 427.9 434 54.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 9.7e-108 396.7 443 50.8
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 2.4e-106 392.1 279 71.7
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.1e-106 391.7 398 52.3
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.8e-104 384.8 1029 31.2
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.8e-101 375.9 327 61.5
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 3.1e-98 365.2 276 67.0
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 4.0e-85 321.6 340 49.4
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 3.3e-79 302.0 260 62.3
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 2.3e-69 269.2 516 37.6
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.6e-68 265.8 198 66.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 8.1e-62 244.2 328 43.9
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.6e-57 228.4 315 49.2
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 4.3e-55 221.9 217 55.3
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 1.6e-41 176.8 279 41.6
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 5.8e-36 158.3 315 33.7
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.8e-32 146.7 83 80.7
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.0e-24 120.9 245 35.1
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.8e-24 120.2 175 44.6
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.6e-22 113.6 67 79.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 4.8e-22 112.1 67 77.6
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 6.9e-21 108.2 190 38.4
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 9.0e-21 107.8 66 78.8
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 3.4e-20 105.9 66 75.8
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.0e-19 104.4 68 72.1
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-19 101.7 101 48.5
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 6.5e-19 101.7 178 33.1
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.9e-18 100.1 106 51.9
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 2.5e-18 99.8 111 51.4
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-17 97.4 977 18.4
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 8.7e-16 91.3 198 27.8
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 6.3e-14 85.1 55 72.7
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 3.1e-13 82.8 56 76.8
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 1.2e-12 80.9 124 39.5
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 1.7e-11 77.0 65 64.6
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 3.3e-07 62.8 46 58.7


User provided reference genes

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