Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold905G53712 Striga asiatica HOM05D004714 ORTHO05D005614 8.5e-90 333.6 160 100.0
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 9.9e-30 134.0 97 67.0
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 6.4e-29 131.3 97 61.9
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 1.9e-28 129.8 150 48.0
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 3.9e-26 122.1 150 44.7
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 3.9e-26 122.1 150 45.3
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 5.1e-26 121.7 150 45.3
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 6.7e-26 121.3 150 44.7
Gohir.D08G028800 Gossypium hirsutum HOM05D004714 ORTHO05D005614 6.7e-26 121.3 150 44.7
Atru.chr7.820 Acer truncatum HOM05D004714 ORTHO05D005614 1.1e-25 120.6 150 44.0
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.1e-25 120.6 137 46.7
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.9e-25 119.8 150 44.7
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.9e-25 119.8 150 44.7
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 2.5e-25 119.4 137 46.0
Dinv25435 Davidia involucrata HOM05D004714 ORTHO05D005614 2.5e-25 119.4 130 48.5
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 2.5e-25 119.4 150 44.0
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 4.3e-25 118.6 141 45.4
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 7.4e-25 117.9 140 45.0
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 7.4e-25 117.9 149 43.6
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 1.6e-24 116.7 150 44.0
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 1.6e-24 116.7 150 43.3
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 1.6e-24 116.7 150 43.3
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 1.6e-24 116.7 150 43.3
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 2.1e-24 116.3 150 42.0
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 2.1e-24 116.3 144 44.4
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 2.8e-24 115.9 150 42.7
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 2.8e-24 115.9 150 43.3
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 3.7e-24 115.5 150 42.0
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 4.8e-24 115.2 149 43.6
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 4.8e-24 115.2 149 43.0
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 4.8e-24 115.2 150 42.7
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 4.8e-24 115.2 150 43.3
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 6.2e-24 114.8 149 43.6
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 6.2e-24 114.8 149 43.6
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 6.2e-24 114.8 149 43.6
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 6.2e-24 114.8 149 43.6
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 6.2e-24 114.8 150 42.0
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 6.2e-24 114.8 149 43.6
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 6.2e-24 114.8 149 43.6
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 8.1e-24 114.4 149 43.6
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 1.1e-23 114.0 147 42.9
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 1.1e-23 114.0 150 41.3
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 1.4e-23 113.6 149 43.0
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 1.4e-23 113.6 150 42.7
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 1.4e-23 113.6 150 43.3
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 1.4e-23 113.6 150 42.0
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 1.4e-23 113.6 151 42.4
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 1.4e-23 113.6 150 41.3
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 1.8e-23 113.2 150 42.0
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 1.8e-23 113.2 150 42.0
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 1.8e-23 113.2 150 42.0
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 1.8e-23 113.2 149 42.3
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.8e-23 113.2 149 42.3
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 2.4e-23 112.8 136 45.6
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 2.4e-23 112.8 136 45.6
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 2.4e-23 112.8 136 45.6
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 2.4e-23 112.8 150 41.3
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 2.4e-23 112.8 150 42.0
Nitab4.5_0000792g0180 Nicotiana tabacum HOM05D004714 ORTHO05D005614 2.4e-23 112.8 139 44.6
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 2.4e-23 112.8 150 42.0
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 3.1e-23 112.5 149 42.3
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 3.1e-23 112.5 150 42.7
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 3.1e-23 112.5 150 41.3
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 3.1e-23 112.5 150 40.7
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 3.1e-23 112.5 149 42.3
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 3.1e-23 112.5 150 41.3
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 4.0e-23 112.1 150 42.0
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 5.3e-23 111.7 149 43.0
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 5.3e-23 111.7 149 43.0
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 5.3e-23 111.7 149 43.0
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 5.3e-23 111.7 149 43.0
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 5.3e-23 111.7 149 42.3
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 5.3e-23 111.7 149 43.0
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 6.9e-23 111.3 151 42.4
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 6.9e-23 111.3 149 40.9
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 6.9e-23 111.3 150 41.3
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.9e-23 111.3 150 41.3
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 6.9e-23 111.3 150 41.3
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 1.2e-22 110.5 150 40.7
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 1.2e-22 110.5 149 41.6
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 1.2e-22 110.5 150 42.0
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 1.5e-22 110.2 150 40.7
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 1.5e-22 110.2 150 41.3
Sed0009644 Sechium edule HOM05D004714 ORTHO05D005614 1.5e-22 110.2 150 40.7
Lj7A660G39 Lonicera japonica HOM05D004714 ORTHO05D005614 2.0e-22 109.8 164 38.4
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 2.0e-22 109.8 149 41.6
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 2.0e-22 109.8 149 41.6
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 2.6e-22 109.4 149 42.3
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 2.6e-22 109.4 149 42.3
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 2.6e-22 109.4 150 41.3
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 2.6e-22 109.4 150 42.0
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 2.6e-22 109.4 150 40.7
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 2.6e-22 109.4 149 41.6
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 3.4e-22 109.0 150 41.3
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 3.4e-22 109.0 150 40.7
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 3.4e-22 109.0 150 40.0
HPP92_017314 Vanilla planifolia HOM05D004714 ORTHO05D005614 3.4e-22 109.0 140 42.1
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 4.5e-22 108.6 149 42.3
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 4.5e-22 108.6 150 41.3
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 4.5e-22 108.6 149 41.6
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 4.5e-22 108.6 150 40.7
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 5.8e-22 108.2 150 40.7
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 7.6e-22 107.8 150 41.3
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 9.9e-22 107.5 150 40.7
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 9.9e-22 107.5 150 40.0
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 1.3e-21 107.1 149 40.3
RcHm_v2.0_Chr4g0400601 Rosa chinensis HOM05D004714 ORTHO05D005614 1.7e-21 106.7 149 40.9
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 2.9e-21 105.9 149 40.9
TWI34G0504 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 2.9e-21 105.9 148 39.9
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 3.8e-21 105.5 180 37.2
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 3.8e-21 105.5 149 41.6
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 4.9e-21 105.1 150 38.7
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 4.9e-21 105.1 149 40.3
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 6.4e-21 104.8 142 42.3
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 8.4e-21 104.4 150 39.3
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 1.1e-20 104.0 150 39.3
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 1.1e-20 104.0 148 40.5
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 1.4e-20 103.6 150 38.7
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 1.4e-20 103.6 149 40.3
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 3.2e-20 102.4 149 38.3
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 4.2e-20 102.1 151 37.7
SMO115G0141 Selaginella moellendorffii HOM05D004714 ORTHO05D005614 1.2e-19 100.5 172 37.2
Thecc.09G241900 Theobroma cacao HOM05D004714 ORTHO05D005614 2.1e-19 99.8 141 39.7
AagrBONN_evm.TU.Sc2ySwM_117.468 Anthoceros agrestis HOM05D004714 ORTHO05D005614 4.6e-19 98.6 152 37.5
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 1.3e-18 97.1 151 38.4
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 2.1e-16 89.7 114 42.1
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 2.0e-14 83.2 170 34.1
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 3.4e-14 82.4 153 30.7
Oeu015328.1 Olea europaea HOM05D004714 ORTHO05D005614 4.9e-13 78.6 51 68.6
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 1.4e-12 77.0 115 40.0
Ca_12517_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 1.4e-12 77.0 97 46.4
MD03G1036000 Malus domestica HOM05D004714 ORTHO05D005614 1.4e-12 77.0 58 62.1
CSS0022683 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 3.2e-12 75.9 49 69.4
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 5.5e-12 75.1 58 58.6
BcaB05g22335 Brassica carinata HOM05D004714 ORTHO05D005614 7.1e-12 74.7 132 37.9
PRCOL_00006789 Prasinoderma coloniale HOM05D004714 ORTHO05D005614 3.5e-11 72.4 135 33.3
Rhsim08G0112000 Rhododendron simsii HOM05D004714 ORTHO05D005614 4.6e-11 72.0 112 40.2
QL05p067644 Quercus lobata HOM05D004714 ORTHO05D005614 3.0e-10 69.3 47 68.1
MD03G1035800 Malus domestica HOM05D004714 ORTHO05D005614 5.1e-10 68.6 42 69.0
Zm00001eb302180 Zea mays HOM05D004714 ORTHO05D005614 8.7e-10 67.8 39 76.9
Haze_26398 Corylus avellana HOM05D004714 ORTHO05D005614 1.9e-09 66.6 130 32.3
CSS0041015 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 4.3e-09 65.5 37 73.0
Gohir.D09G156950 Gossypium hirsutum HOM05D004714 ORTHO05D005614 9.7e-09 64.3 37 70.3
RcHm_v2.0_Chr4g0400661 Rosa chinensis HOM05D004714 ORTHO05D005614 1.6e-08 63.5 36 72.2
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 4.8e-08 62.0 37 73.0
Gorai.006G178500 Gossypium raimondii HOM05D004714 ORTHO05D005614 4.8e-08 62.0 37 67.6
Cre05.g245450 Chlamydomonas reinhardtii HOM05D004714 ORTHO05D005614 1.1e-07 60.8 37 67.6
MCO01G546 Micromonas commoda HOM05D004714 ORTHO05D005614 1.1e-07 60.8 151 30.5
MD16G1253300 Malus domestica HOM05D004714 ORTHO05D005614 1.2e-06 57.4 41 58.5


User provided reference genes

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