Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 3.2e-104 381.7 186 100.0
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 4.9e-97 357.8 186 92.5
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 3.3e-93 345.1 186 86.6
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.3e-92 343.2 188 87.8
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 3.6e-92 341.7 186 85.5
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 4.8e-92 341.3 185 86.5
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 8.1e-92 340.5 188 85.6
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 8.1e-92 340.5 187 87.2
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 8.1e-92 340.5 186 84.9
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 8.1e-92 340.5 186 87.1
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.1e-91 340.1 187 87.2
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.4e-91 339.7 184 87.0
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 2.4e-91 339.0 187 87.7
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 2.4e-91 339.0 188 85.6
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 5.3e-91 337.8 186 83.9
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 86.0
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 1.2e-90 336.7 188 85.1
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 1.2e-90 336.7 186 84.4
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.5e-90 336.3 186 83.3
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.4
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 2.0e-90 335.9 186 84.4
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 85.5
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 84.9
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 83.9
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 82.8
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 82.8
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 84.4
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.3
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.9
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 5.8e-90 334.3 186 83.9
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 1.3e-89 333.2 186 85.5
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.3e-89 333.2 186 83.9
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 82.8
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 82.8
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 82.8
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 84.4
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 82.3
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 82.3
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 82.3
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 3.8e-89 331.6 186 82.3
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 3.8e-89 331.6 184 83.2
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 4.9e-89 331.3 182 84.6
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 6.4e-89 330.9 186 82.3
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 6.4e-89 330.9 186 83.3
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 8.4e-89 330.5 186 81.2
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 8.4e-89 330.5 184 81.5
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.1e-88 330.1 186 82.3
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.1e-88 330.1 186 82.8
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 2.4e-88 328.9 183 83.6
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 81.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 3.2e-88 328.6 185 81.6
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 81.7
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 81.7
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 182 84.1
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 4.2e-88 328.2 182 84.1
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 186 82.8
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 5.4e-88 327.8 186 80.6
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.1e-88 327.4 186 80.6
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.6e-87 326.2 186 83.9
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.6e-87 326.2 186 81.7
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 1.6e-87 326.2 184 81.5
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 2.1e-87 325.9 186 81.2
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 2.7e-87 325.5 186 80.6
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 2.7e-87 325.5 186 81.2
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 2.7e-87 325.5 186 80.1
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.6e-87 324.7 186 80.6
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 6.0e-87 324.3 185 80.5
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.0e-86 323.6 186 81.2
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 1.0e-86 323.6 185 80.0
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 1.8e-86 322.8 184 80.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 6.7e-86 320.9 178 83.7
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.7e-86 320.9 184 78.8
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 6.7e-86 320.9 186 79.6
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 8.7e-86 320.5 186 80.6
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.1e-85 320.1 185 78.9
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 1.9e-85 319.3 186 79.0
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 3.3e-85 318.5 186 79.6
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 4.3e-85 318.2 186 78.5
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 7.4e-85 317.4 186 79.0
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.6e-84 316.2 186 79.0
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.1e-84 315.8 183 80.9
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.7e-84 315.1 186 77.4
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.5e-82 309.7 183 77.6
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.0e-82 309.3 183 77.6
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 2.6e-82 308.9 183 77.0
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 5.8e-82 307.8 183 77.0
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 5.8e-82 307.8 183 77.0
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 7.6e-82 307.4 180 77.2
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 7.6e-82 307.4 183 77.0
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 1.3e-81 306.6 180 77.2
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.7e-81 306.2 172 80.8
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 2.9e-81 305.4 180 76.7
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 2.9e-81 305.4 180 76.7
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 2.9e-81 305.4 180 76.7
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 2.9e-81 305.4 180 76.7
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 4.9e-81 304.7 180 76.7
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 8.4e-81 303.9 180 76.1
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-80 303.5 180 76.1
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-80 303.5 180 75.6
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 1.1e-80 303.5 180 75.6
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 1.9e-80 302.8 186 76.9
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 3.2e-80 302.0 186 76.3
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 7.1e-80 300.8 186 75.8
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 1.0e-78 297.0 181 77.9
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 1.3e-78 296.6 184 73.9
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 1.8e-78 296.2 187 74.3
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.1e-77 293.5 187 73.8
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 5.6e-77 291.2 185 71.9
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.5e-74 283.1 186 72.0
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 3.4e-74 282.0 184 69.0
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 7.6e-74 280.8 173 72.3
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 2.2e-73 279.3 186 69.4
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 2.2e-73 279.3 186 70.4
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 2.9e-73 278.9 186 70.4
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 6.5e-73 277.7 186 69.4
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 1.4e-72 276.6 186 70.4
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.9e-72 276.2 186 69.4
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 5.5e-72 274.6 186 69.4
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 3.5e-71 271.9 186 68.3
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 2.2e-65 252.7 186 62.9
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.3e-60 236.9 180 55.0
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 4.1e-59 231.9 180 57.8
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 3.0e-54 215.7 183 52.5
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 5.1e-54 214.9 187 51.3
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.5e-53 213.4 172 60.5
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.7e-52 209.9 177 52.0
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 1.5e-50 203.4 187 50.8
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 4.8e-44 181.8 151 56.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 2.1e-39 166.4 180 46.7
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 1.4e-38 163.7 89 87.6
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 8.0e-31 137.9 172 43.6
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 1.9e-24 116.7 88 60.2
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.5e-21 107.1 154 35.1
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 7.0e-19 98.2 54 79.6
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.5e-08 63.9 88 37.5


User provided reference genes

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