Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 9.3e-178 626.7 306 100.0
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 9.9e-95 350.9 216 78.2
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 7.6e-87 324.7 216 75.0
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.9e-86 322.8 208 76.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.9e-83 312.4 212 72.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 5.6e-82 308.5 221 69.2
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.5e-79 300.4 224 71.0
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 9.9e-79 297.7 226 66.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.2e-76 290.8 222 70.3
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.6e-76 290.4 225 64.0
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.7e-76 289.7 227 66.5
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 7.9e-76 288.1 226 63.7
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.3e-75 287.3 218 67.0
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.8e-75 287.0 226 65.5
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.9e-75 285.8 227 65.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.9e-75 285.8 227 65.6
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 6.7e-75 285.0 227 63.4
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 6.7e-75 285.0 221 64.3
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 8.7e-75 284.6 226 65.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.5e-74 283.9 226 63.7
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.9e-74 283.5 222 63.5
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.3e-73 280.8 226 62.4
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.3e-73 280.8 223 62.8
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.1e-73 280.0 221 63.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 4.8e-73 278.9 224 63.4
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.4e-72 277.3 229 61.6
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.4e-72 277.3 228 63.2
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.4e-72 277.3 228 63.2
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.8e-72 276.9 222 61.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 2.4e-72 276.6 220 65.0
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-72 276.6 222 61.7
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.1e-72 276.2 222 61.7
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.1e-72 276.2 228 62.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.1e-72 276.2 229 62.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 3.1e-72 276.2 221 62.9
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 4.0e-72 275.8 226 62.4
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 5.3e-72 275.4 226 62.8
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 6.9e-72 275.0 222 62.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.0e-72 274.6 222 61.3
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.0e-72 274.6 222 61.3
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 9.0e-72 274.6 221 62.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.2e-71 274.2 222 61.3
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.2e-71 274.2 222 64.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.5e-71 273.9 229 62.9
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.5e-71 273.9 211 66.4
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.4e-71 272.7 219 64.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.5e-71 272.3 227 62.1
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 7.6e-71 271.6 219 65.3
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 2.2e-70 270.0 224 62.5
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.2e-70 270.0 219 63.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.9e-70 269.6 226 62.4
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.8e-70 269.2 225 59.1
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.1e-69 267.7 223 60.1
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.4e-69 267.3 227 60.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.4e-69 267.3 225 60.4
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-69 267.3 223 62.3
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.9e-69 266.9 222 60.8
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-68 264.2 223 61.4
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.7e-68 263.1 225 60.4
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 3.5e-68 262.7 222 59.0
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.3e-67 260.0 212 59.9
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.9e-67 259.2 214 61.7
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.9e-67 259.2 214 61.2
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 5.1e-67 258.8 214 61.2
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.7e-67 258.1 223 57.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.5e-66 257.3 235 59.6
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.5e-66 257.3 232 58.6
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.5e-66 257.3 219 58.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.3e-66 256.1 223 58.7
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.7e-66 255.4 211 61.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.3e-65 254.2 214 59.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.3e-65 254.2 221 62.0
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 2.1e-65 253.4 224 55.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.7e-65 252.7 211 62.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.8e-65 252.3 214 58.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 6.2e-65 251.9 214 59.8
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 8.2e-65 251.5 221 59.7
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.4e-64 250.8 219 59.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.0e-64 249.2 226 57.5
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.9e-64 248.4 222 60.8
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 9.0e-64 248.1 223 56.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 9.0e-64 248.1 223 57.0
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 9.0e-64 248.1 211 60.2
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.4e-63 246.1 223 57.0
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.4e-63 246.1 201 64.7
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 4.5e-63 245.7 235 58.7
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 5.8e-63 245.4 219 59.8
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 7.6e-63 245.0 221 60.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.0e-62 244.6 216 61.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.0e-62 244.6 227 57.7
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.3e-62 244.2 217 56.2
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.3e-62 244.2 219 60.3
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.2e-62 243.4 219 58.4
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 1.1e-61 241.1 227 59.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.2e-61 239.6 222 59.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 7.1e-61 238.4 224 58.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.1e-61 238.4 222 58.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.1e-61 238.4 222 58.6
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 9.3e-61 238.0 236 55.5
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.7e-60 236.5 210 58.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.5e-60 236.1 219 56.2
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.5e-60 236.1 219 56.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.5e-60 236.1 219 56.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 6.1e-60 235.3 219 55.7
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.8e-59 233.8 220 55.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.3e-59 233.4 222 55.4
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.3e-59 233.4 212 56.1
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.0e-59 233.0 219 55.7
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.9e-59 232.6 243 52.7
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 3.9e-59 232.6 219 58.4
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.5e-58 229.9 224 55.4
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.6e-57 227.3 224 53.1
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.7e-57 226.1 218 56.9
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 4.8e-57 225.7 233 52.4
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.8e-57 225.7 215 55.8
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 6.3e-57 225.3 213 56.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 6.3e-57 225.3 219 55.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 8.2e-57 224.9 209 57.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-56 224.6 219 54.8
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.4e-56 223.4 229 52.8
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.1e-56 222.6 218 56.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 5.3e-56 222.2 219 54.8
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 5.3e-56 222.2 213 55.9
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 5.3e-56 222.2 213 55.9
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 9.0e-56 221.5 166 68.1
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.7e-55 218.4 142 73.2
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.9e-54 216.5 251 52.2
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 3.8e-54 216.1 230 52.2
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 3.8e-54 216.1 194 58.2
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.4e-53 214.2 241 50.2
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 9.4e-53 211.5 217 52.1
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-52 211.1 228 51.8
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 2.7e-52 209.9 152 65.1
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 4.6e-52 209.1 227 52.0
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-51 207.6 219 53.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.8e-51 207.2 188 60.1
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 6.7e-51 205.3 216 51.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.5e-50 204.1 221 51.6
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.0e-50 203.8 182 57.7
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 4.3e-50 202.6 158 60.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.4e-50 201.8 141 67.4
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.1e-48 196.4 146 63.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.1e-48 196.4 195 50.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.9e-48 195.3 197 50.3
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 6.9e-48 195.3 186 54.3
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.3e-46 191.0 215 48.4
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.2e-46 190.3 215 47.4
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.9e-46 189.9 215 48.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.0e-46 189.1 221 48.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 6.5e-46 188.7 186 53.2
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 6.5e-46 188.7 135 63.7
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.5e-46 188.3 221 48.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.6e-44 183.0 221 46.6
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.7e-44 182.6 246 42.7
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 7.9e-44 181.8 221 47.1
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 8.8e-43 178.3 221 47.1
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.6e-42 176.8 123 69.1
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.7e-41 172.9 219 48.9
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 7.0e-40 168.7 128 60.9
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 3.5e-39 166.4 154 57.8
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 5.9e-39 165.6 219 47.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 5.9e-39 165.6 222 44.1
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.5e-38 162.2 132 58.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.5e-38 162.2 126 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 7.2e-37 158.7 221 43.4
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.8e-35 154.1 108 64.8
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.3e-35 153.7 122 58.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 4.4e-34 149.4 139 54.7
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.2e-33 147.1 271 37.3
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-31 141.4 209 45.0
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.9e-30 136.7 219 40.6
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 3.8e-30 136.3 82 76.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.2e-29 132.9 225 42.2
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.2e-29 132.9 225 42.2
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.5e-26 122.1 88 65.9
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.2e-21 106.3 63 74.6
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.5e-18 97.8 110 53.6
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 4.9e-17 92.8 54 74.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.7e-15 87.0 54 74.1
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.8e-12 77.0 129 42.6
SGA_v2.0_scaffold141G35518 Striga asiatica HOM05D000145 ORTHO05D399266 2.9e-09 67.0 85 45.9


User provided reference genes

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