Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 3.2e-190 668.3 348 100.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.3e-151 540.0 355 82.0
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 9.1e-145 517.3 339 81.4
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.5e-144 516.5 360 78.1
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.4e-137 493.4 330 75.8
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.4e-137 492.7 319 77.7
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.2e-136 490.3 325 75.1
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.6e-136 489.2 331 74.0
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.0e-135 487.3 327 74.6
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.5e-134 483.4 328 74.1
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.9e-134 483.0 313 77.6
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 5.5e-134 481.5 333 72.7
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.5e-134 481.5 346 70.5
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 6.1e-133 478.0 323 74.3
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 1.4e-132 476.9 317 75.1
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.3e-132 476.1 310 76.1
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 2.3e-132 476.1 310 76.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 4.0e-132 475.3 318 75.5
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 4.0e-132 475.3 314 75.5
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 5.2e-132 474.9 310 75.5
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 5.2e-132 474.9 306 77.1
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 6.7e-132 474.6 310 75.8
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 6.7e-132 474.6 331 72.8
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 8.8e-132 474.2 324 73.1
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.1e-131 473.8 315 75.2
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.5e-131 473.4 345 69.0
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 2.0e-131 473.0 346 69.4
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 2.6e-131 472.6 315 74.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.6e-131 472.6 327 73.4
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 3.3e-131 472.2 335 71.0
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 4.4e-131 471.9 329 72.3
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 4.4e-131 471.9 325 73.5
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.7e-131 471.5 360 67.2
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 7.5e-131 471.1 346 68.8
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 7.5e-131 471.1 325 73.5
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 9.7e-131 470.7 323 73.4
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 9.7e-131 470.7 327 72.8
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 1.3e-130 470.3 316 74.1
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 2.2e-130 469.5 328 72.6
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 2.2e-130 469.5 346 68.2
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.8e-130 469.2 332 72.0
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 3.7e-130 468.8 331 72.5
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 6.3e-130 468.0 329 72.9
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 8.2e-130 467.6 345 69.3
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.1e-129 467.2 336 70.5
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.1e-129 467.2 345 69.3
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.1e-129 467.2 302 76.8
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.4e-129 466.8 348 69.3
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.8e-129 466.5 343 70.3
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 3.1e-129 465.7 329 72.3
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 5.3e-129 464.9 327 71.6
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 9.1e-129 464.2 318 72.6
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 9.1e-129 464.2 327 71.9
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.6e-128 463.4 335 70.1
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.0e-128 463.0 301 76.7
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 3.5e-128 462.2 330 70.6
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.5e-128 462.2 334 71.0
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 4.5e-128 461.8 322 71.7
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 5.9e-128 461.5 335 69.9
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.0e-127 460.7 326 72.4
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 2.2e-127 459.5 304 74.7
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 3.8e-127 458.8 329 71.4
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 5.0e-127 458.4 324 72.5
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 6.5e-127 458.0 319 72.4
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.5e-127 457.6 319 72.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.5e-126 456.1 329 70.2
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 5.5e-126 454.9 311 73.3
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 1.6e-125 453.4 324 71.0
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.1e-125 453.0 324 71.3
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.7e-125 452.6 319 71.8
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.1e-125 451.4 320 72.5
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 8.0e-125 451.1 330 70.6
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 8.0e-125 451.1 333 71.8
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 1.0e-124 450.7 334 67.1
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 1.0e-124 450.7 338 68.3
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 5.2e-124 448.4 346 66.8
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 8.8e-124 447.6 327 69.7
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.2e-123 447.2 303 73.9
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 2.6e-123 446.0 346 66.2
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 3.4e-123 445.7 332 68.4
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 4.4e-123 445.3 329 70.2
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 9.8e-123 444.1 329 69.9
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 9.8e-123 444.1 326 67.5
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 9.8e-123 444.1 346 66.2
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 2.2e-122 443.0 347 65.1
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 2.8e-122 442.6 315 67.9
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.8e-122 442.6 314 68.8
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 4.8e-122 441.8 314 68.8
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 8.3e-122 441.0 334 65.6
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 7.0e-121 438.0 319 69.0
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.7e-120 436.0 304 70.4
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.5e-120 435.6 306 70.3
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.7e-119 433.3 300 72.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 2.2e-119 433.0 291 74.2
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 3.8e-119 432.2 324 67.0
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.2e-118 429.1 302 70.2
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 7.2e-118 427.9 346 62.4
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.6e-117 426.8 363 63.9
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 8.0e-117 424.5 318 67.6
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.3e-116 422.9 313 68.7
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.5e-115 420.2 318 67.9
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 2.0e-115 419.9 334 63.5
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 4.4e-115 418.7 318 65.1
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.7e-114 416.8 311 63.7
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.8e-114 416.0 306 68.6
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.4e-113 413.7 316 63.0
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 4.1e-113 412.1 313 66.8
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 4.5e-112 408.7 316 61.7
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.0e-111 407.5 323 62.5
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.0e-111 407.5 322 63.4
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.0e-111 407.5 322 63.4
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 2.3e-111 406.4 289 72.7
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 5.0e-111 405.2 323 62.8
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 6.6e-111 404.8 328 61.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.1e-110 404.1 329 61.7
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 5.6e-110 401.7 329 61.7
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 5.6e-110 401.7 329 61.4
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 7.3e-110 401.4 321 62.3
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 9.5e-110 401.0 329 61.7
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.2e-109 400.6 323 62.5
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.2e-109 400.6 318 62.3
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 6.8e-108 394.8 323 61.9
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 8.9e-108 394.4 326 60.4
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 8.9e-108 394.4 326 60.4
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.6e-107 392.9 282 71.6
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 3.4e-107 392.5 316 61.7
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 4.4e-107 392.1 321 60.7
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.3e-106 390.6 316 62.0
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.9e-106 389.4 328 60.7
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 2.9e-106 389.4 291 63.2
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 3.3e-102 375.9 332 61.7
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 2.2e-98 363.2 295 61.0
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 2.0e-96 356.7 302 63.6
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.3e-95 354.0 286 61.9
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-92 344.4 329 54.7
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 4.4e-91 339.0 300 60.3
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 1.4e-89 334.0 308 60.1
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 3.2e-89 332.8 269 61.3
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 4.6e-88 328.9 192 84.4
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 8.6e-87 324.7 310 54.2
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 3.6e-85 319.3 176 87.5
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 4.4e-83 312.4 180 85.0
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.3e-82 310.8 298 52.3
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.2e-80 304.3 293 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 6.0e-80 302.0 299 55.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 6.0e-80 302.0 308 52.3
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 4.7e-77 292.4 194 74.7
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.4e-73 280.8 192 74.0
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.2e-72 277.7 181 74.6
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.0e-71 274.6 232 62.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.8e-69 266.5 282 52.8
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 6.2e-61 238.8 310 41.6
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.9e-50 203.4 119 85.7
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 7.9e-48 195.3 134 70.9
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.5e-46 190.3 115 77.4
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 1.0e-42 178.3 116 73.3
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 2.2e-42 177.2 114 71.9
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 4.8e-37 159.5 89 84.3
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 9.0e-36 155.2 108 71.3
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 4.5e-27 126.3 92 63.0
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 7.4e-22 109.0 315 27.6
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.2e-18 97.4 301 26.2


User provided reference genes

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